View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5397_low_6 (Length: 367)
Name: NF5397_low_6
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 65 - 351
Target Start/End: Original strand, 923980 - 924266
Alignment:
| Q |
65 |
tttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgttatgttgataaaatgactagatttactctttaac |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
923980 |
tttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgttatgttgataaaatgactggatttactctttaac |
924079 |
T |
|
| Q |
165 |
ctaattctttgcctatgatgttaattcttatactccatgagaaatggagtatacnnnnnnnnnngtcaactctgtgaagttgttccacatatattaaatg |
264 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
924080 |
ctaattctttgcctatgatttttattcttattctccatgagaaatggagtatacttttttttttgtcaactctgtgaagttgttccacatatattaaatg |
924179 |
T |
|
| Q |
265 |
ggtcacaaacgtatttagtttgcttttcctttcacaaatg-ttttattcataccattcattctctcatttgcactgaatactaatctt |
351 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
924180 |
tgtcacaaacgtatttagtttg-ttttcctttcacaaatgtttttattcataccattcattctctcatttgcactgaatactaatctt |
924266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 22996607 - 22996804
Alignment:
| Q |
20 |
ataagttatttgaatttttagcatataggacagtacactagcgagtttatattcatcattaactcctctcacatcagatttatttcatattgttaataac |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
22996607 |
ataagttatttggatttttagcatataggacagtacactagcgagtttatattcattattaactcctctcacatcagatttattttgtaatgttaataac |
22996706 |
T |
|
| Q |
120 |
ttttgctttgttatgttgataaaatgactag-atttactctttaacctaattctttgcctatgatgttaattcttatactccatgagaaatggagtata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| | || ||| ||||||||| || || ||||||||||||| |||||||||||||||| |
|
|
| T |
22996707 |
ttttgctttgttatgttgataaaatgactagaatttactctttga-ctgattatttgcctataatttttattcttatactccgtgagaaatggagtata |
22996804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 33 - 217
Target Start/End: Complemental strand, 22964946 - 22964762
Alignment:
| Q |
33 |
atttttagcatataggacagtacactagcgagtttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgtta |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| || |||||||||| |||||||||||| |
|
|
| T |
22964946 |
atttttagcatataggacagtacactagcgagtttatattcattattaactcctctcatatcaaatttatttcgtaatgttaataac-tttgctttgtta |
22964848 |
T |
|
| Q |
133 |
tgttgataaaatgactag-atttactctttaacctaattctttgcctatgatgttaattcttatactccatgagaaatggagtata |
217 |
Q |
| |
|
|||||||||||| ||||| || |||||||| || ||||||||||||| || || ||||||||||||||||| |||||||||||| |
|
|
| T |
22964847 |
tgttgataaaataactagaatatactcttttgactgattctttgcctataatttttattcttatactccatgaaaaatggagtata |
22964762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University