View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5397_low_7 (Length: 360)
Name: NF5397_low_7
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 6177159 - 6176826
Alignment:
| Q |
18 |
aaatattcagtattgaatattgatgatgagctgagaatagggtggttgtgttgtaaaaagtaaaaattagtgtaagggtgggacctaaagtgcagtaaat |
117 |
Q |
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| T |
6177159 |
aaatattcagtattgaatattgatgatgggctgagaatagggtggttgtgttgtaaaaagtaaaaattagtgtaagggtgggacctaaagtgcagtaaat |
6177060 |
T |
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| Q |
118 |
aaaagagatacaaacctgtacttggagctgaagctgtttaaggtattcaatagcttcatctagcattgaagctttatcagtctgtcacacacatggaaac |
217 |
Q |
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| T |
6177059 |
aaaagagatacaaacctgtacttggagctgaagctgtttaaggtattcaatagcttcatctagcattgaagctttatcagtctgtcacacacatggaaac |
6176960 |
T |
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| Q |
218 |
aatccactacattaagaatactaattctaattnnnnnnnnnnnnnnntcacaccctttaaactaaggtctaaaaatgttatgcaccttgttagaatttgg |
317 |
Q |
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| T |
6176959 |
aatccactacgttaagaataataattctaattaaaaaaaataaaaaatcacaccctttaaactaaggtctaaaaatgttatgcaccttgttagaatttgg |
6176860 |
T |
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| Q |
318 |
aattagattttgtaaagctttcattttctcattg |
351 |
Q |
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| T |
6176859 |
aattagattttgtaaagctttcattttctcattg |
6176826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 5756262 - 5756212
Alignment:
| Q |
300 |
caccttgttagaatttggaattagattttgtaaagctttcattttctcatt |
350 |
Q |
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| T |
5756262 |
caccttgttagaatttggaattaaattttgtaaggctttcaatttctcatt |
5756212 |
T |
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