View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5397_low_8 (Length: 323)
Name: NF5397_low_8
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397_low_8 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 40894106 - 40894410
Alignment:
| Q |
19 |
caagaatggagacatattgcagactagtcaatccctgatcacaattaagaggataatgtggatggtgagagtagtgagaacactgataatagtggataat |
118 |
Q |
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| T |
40894106 |
caagaatggagacatattgcagactagtcaatcgctgatcacaattaagaggataatgtggatggtgagagtagtgagaacactgataatagtggataat |
40894205 |
T |
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| Q |
119 |
gacacattggtaagaatgtagttgatagagatgaactgcactcatgcgatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcac |
218 |
Q |
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| T |
40894206 |
gacacattggtaagaatgtagttgatagagatgaactgcactcatgcgatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcac |
40894305 |
T |
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| Q |
219 |
ctctcatgatgaaatctttcatgcacttgactggcttcaatagaaaaacctctgctccttcctccaggcacctgcaaatcagtgagagtaaaactattaa |
318 |
Q |
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| T |
40894306 |
ctctcatgatgaaatctttcatgcacttgactggcttcaatagaaaaacctctgctccttcctccaggcacctgcaaatcagtgagagtaaaactattaa |
40894405 |
T |
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| Q |
319 |
gaagc |
323 |
Q |
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| T |
40894406 |
gaagc |
40894410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 323
Target Start/End: Complemental strand, 44155671 - 44155414
Alignment:
| Q |
66 |
agaggataatgtggatggtgagagtagtgagaacactgataatagtggataatgacacattggtaagaatgtagttgatagagatgaactgcactcatgc |
165 |
Q |
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| T |
44155671 |
agaggataatgtggatggtgagagtagtgagaacactgatgatggtggctaatgacacatttgtgagaatgtactcgatagagataaactgcacttatct |
44155572 |
T |
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| Q |
166 |
gatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcacctctcatgatgaaatctttcatgcacttga---ctg---gcttcaat |
259 |
Q |
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| T |
44155571 |
gatgatcgcattctttt----caaaaaactttcctcaccaactttcacttcacctctcatgatgaactctttcaagcacttgacacctgacaacttgact |
44155476 |
T |
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| Q |
260 |
agaaaaacctctgctccttcctccaggcacctgcaaatc--agtgagagtaaaactattaagaagc |
323 |
Q |
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| T |
44155475 |
ggaa----ctctgctccttcctccagacacctgcaaatcagagtgagagtaaaactattaagaagc |
44155414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 323
Target Start/End: Complemental strand, 44214746 - 44214466
Alignment:
| Q |
66 |
agaggataatgtggatggtgagagtagtgagaacactgataatagtggat------aatgacacattggtaagaatgtagttgatagagatgaac----- |
154 |
Q |
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| T |
44214746 |
agaggataatgttgatggtgagagtggtgagaacaccgacgatggtggatcacatgaatgacgcattggtgagaatgtagttgatagagatggacatgga |
44214647 |
T |
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| Q |
155 |
-tgcactcatgcgatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcacctctcatgatgaaatctttcatgc----------- |
242 |
Q |
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| T |
44214646 |
ctacaatcatctgatgatcgcattcttttgagagaaca----tttctcgccatccttcacttcacctctcatgatgaaatctttcaggcgtcttacatct |
44214551 |
T |
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| Q |
243 |
----acttgactggcttcaatagaaaaacctctgctccttcctccaggcacctgcaaatcagtgagagtaaaactattaagaagc |
323 |
Q |
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| T |
44214550 |
gacaatttgactggctttaacaaaaaatcctctgctccttcctccaaacacctgcaaattagtgaaaataaaactattaagaagc |
44214466 |
T |
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