View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5397_low_9 (Length: 319)
Name: NF5397_low_9
Description: NF5397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5397_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 456552 - 456251
Alignment:
| Q |
2 |
gtgaagtagtggtgacggagtccatgacggtgtatggattgatgcagtgcacgaatgacttaacgaatagtgaatgtgggacgtgtttgaaaaatgctat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
456552 |
gtgaagtagtggtgacggagtccatgacggtgtatggattgatgcagtgcacgaatgacttaacgaatagtgaatgtgggacgtgtttgaaaaatgctat |
456453 |
T |
|
| Q |
102 |
tggaactattcctaatggaaaacagggtgcaagagctttgcttccttcttgtaatgttagatatcaactctacccttttttcacttcatcttcgccttca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
456452 |
tggaactattcctaatggaaaacagggtgcaagagctttgcttccttcttgtaatgttagatatcaactctacccttttttcacttcatcttcgccttca |
456353 |
T |
|
| Q |
202 |
tcttcaggtaataaactattttttgcgtaaacattattcgttttagctctgaacaaattttgtcctaggtgcatgtttgatattacattgacttgttgaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
456352 |
tcttcaggtaataaactattttttgcgtaaacattattcgttttagctctggacaaattttgttctaggtgcacgtttgatattacattgacttgttgaa |
456253 |
T |
|
| Q |
302 |
at |
303 |
Q |
| |
|
|| |
|
|
| T |
456252 |
at |
456251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 473666 - 473610
Alignment:
| Q |
125 |
agggtgcaagagctttgcttccttcttgtaatgttagatatcaactctacccttttt |
181 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
473666 |
agggtgcaagtgctttgcttgcttcttgtattgttagatatcaactctacccgtttt |
473610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University