View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5398_high_2 (Length: 447)
Name: NF5398_high_2
Description: NF5398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5398_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 22816915 - 22816491
Alignment:
| Q |
18 |
tattttgattaaggtatgaattttcatatgatgctttgaagctttggtcttgctgccaatatttgttaattgattgattagatttgtgtgtagaatgaga |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
22816915 |
tattttgattaaggtatgaatttttatatgatgctttgaagcattggtcttgctgccaatatttattaactgattgattagatttgtgtgtagaatgaga |
22816816 |
T |
|
| Q |
118 |
tttttatgaagagactcttctgttgtgtgctattta----------taacttgtttataaacttataagcttgaaaatagaatttttgaaatattatatt |
207 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22816815 |
tttttcagaaga--ctcttctgttgtgtgctatttaatgtttaaaataacttgttcataaacttataagcttgaaaatagaatttttgaaatattatatt |
22816718 |
T |
|
| Q |
208 |
tggattgggaaagtaattatcgaaaattgaaaagtcattttatgaataattatgtgaaacttatttcaaatcttgtcaatcggaaagactagtgcatttt |
307 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22816717 |
tggattgggaaagtagttatcgaaaattgaaaagtcgttttatgaataattatgtgaaacttatttcaaatcttgtcaatcggaaagactagtgcatttt |
22816618 |
T |
|
| Q |
308 |
cttgctctttttctatattgacattattgaagtccgaaatttactttgatttaaagatcatgtgttgttcaattgttgaagattggaacaattattcatc |
407 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22816617 |
cttgctctttttttatattgacattaatgaagtccgaaatttactttgatttaaagatcatgtgttattcaattgttgaagattggaacaattattcatc |
22816518 |
T |
|
| Q |
408 |
actgctcttaaattttgtagttctcct |
434 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
22816517 |
actgctcttaaattttgtagttctcct |
22816491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 22840145 - 22839722
Alignment:
| Q |
18 |
tattttgattaaggtatgaattttcatatgatgctttgaagctttggtcttgctgccaatatttgttaattgattgattagatttgtgtgtagaatgaga |
117 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||| ||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
22840145 |
tatttcgattaaggtttgaactttcatatgatgttttgaagctttgggattgctactaatatttgttaactgattgattagatttgtgtgtacaatgaga |
22840046 |
T |
|
| Q |
118 |
tttttatgaagagactcttctgttgtgtgctatttat----------aacttgtttataaacttataagcttgaaaatagaatttttgaaatattatatt |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| | |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22840045 |
tttttcaaaagagactcttctgttgtgtgcttattattgtttaaaataccttgattataaatttataagcttgaaaatagaatttttgaaatattatatt |
22839946 |
T |
|
| Q |
208 |
tggattgggaaagtaattatcgaaaattgaaaagtcattttatgaataattatgtgaaacttatttcaaatcttgtcaatcggaaagactagtgcatttt |
307 |
Q |
| |
|
||| ||||||| ||| ||||| || ||||||| |||||||||||| || |||||||||||||||||||||||| |||||||||||||| |||| |||||| |
|
|
| T |
22839945 |
tgggttgggaatgtagttatctaacattgaaa-gtcattttatgattatttatgtgaaacttatttcaaatctagtcaatcggaaagattagtacatttt |
22839847 |
T |
|
| Q |
308 |
cttgctctttttctatattgacattattgaagtccgaaatttactttgatttaaagatcatgtgttgttcaattgttgaagattggaacaattattcatc |
407 |
Q |
| |
|
|||| ||||||| |||||||| || |||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| || || |
|
|
| T |
22839846 |
cttggtctttttttatattgaaatgattgaagtccaaaatttactttgatttaaagatcttgcgttgttcaattgttgaggattggaacaattagtcgtc |
22839747 |
T |
|
| Q |
408 |
actgctcttaaattttgtagttctc |
432 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
22839746 |
actgctcttaaatcgtgtagttctc |
22839722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 22798531 - 22798104
Alignment:
| Q |
18 |
tattttgattaaggtatgaattttcatatgatgctttgaagctttggtcttgctgccaatatttgttaattgattgattagatttgtgtgtagaatgaga |
117 |
Q |
| |
|
||||| ||||||||| |||| |||| ||||||||||||||||||||| ||||| | |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
22798531 |
tatttcgattaaggtttgaactttcttatgatgctttgaagctttgggattgctactaatatttgttaaccaattgattagatttgtgtatagaatgaga |
22798432 |
T |
|
| Q |
118 |
ttttt---atgaa-------------gagactcttctgttgtgtgctatttat----------aacttgtttataaacttataagcttgaaaatagaatt |
191 |
Q |
| |
|
||||| |||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
22798431 |
tttttcaaatgagagatttttcaaatgagactcttctgttgtgtgctaattattgtttaaaataacttagttataaacttataagcttaaaaatagaatt |
22798332 |
T |
|
| Q |
192 |
tttgaaatattatatttggattgggaaagtaattatcgaaaattgaaaagtcattttatgaataattatgtgaaacttatttcaaatcttgtcaatcgga |
291 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| || ||||||| |||||||||||| || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
22798331 |
tttgaaatattatatttggattgggaatgtagttatctaacattgaaa-gtcattttatgactatttatgtgaaactcatttcaaatcttgtcaatcgga |
22798233 |
T |
|
| Q |
292 |
aagactagtgcattttcttgctctttttctatattgacattattgaagtccgaaatttactttgatttaaagatcatgtgttgttcaattgttgaagatt |
391 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || |||| |
|
|
| T |
22798232 |
aagactagtacattttcttggtctttttctatattgaaattattgaagtccaaaatttactttgatttaatgatcatgtgttgttcaattgtcgaggatt |
22798133 |
T |
|
| Q |
392 |
ggaacaattattcatcactgctcttaaat |
420 |
Q |
| |
|
| |||||||||| |||| |||||||||| |
|
|
| T |
22798132 |
gaaacaattatttatcatcgctcttaaat |
22798104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 162 - 408
Target Start/End: Complemental strand, 22829392 - 22829147
Alignment:
| Q |
162 |
ttataaacttataagcttgaaaatagaatttttgaaatattatatttggattgggaaagtaattatcgaaaattgaaaagtcattttatgaataattatg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| || ||||||| |||||||||||| || ||||| |
|
|
| T |
22829392 |
ttataaacttataagcttgaaaatagaatttttgaaatattatatttggattggggatgtagttatctaacattgaaa-gtcattttatgactatttatg |
22829294 |
T |
|
| Q |
262 |
tgaaacttatttcaaatcttgtcaatcggaaagactagtgcattttcttgctctttttctatattgacattattgaagtccgaaatttactttgatttaa |
361 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| || |||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
22829293 |
tgaaactcatttcaaatcttgtcaattggaaagactggtacatttttttggtctttttctatattgaaattattgaagtccaaaatttactttgatttaa |
22829194 |
T |
|
| Q |
362 |
agatcatgtgttgttcaattgttgaagattggaacaattattcatca |
408 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
22829193 |
tgatcatgtgttgttcaattgtcgaggattcaaacaattattcatca |
22829147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 22829576 - 22829446
Alignment:
| Q |
18 |
tattttgattaaggtatgaattttcatatgatgctttgaagctttggtcttgctgccaatatttgttaattgattgattagatttgtgtgtagaatgaga |
117 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
22829576 |
tatttcgattaagggttgaactttcatatgatgctttgaagctttgggattgctactaatatttgttaactgattgattagatttgtgtgtaaaatgaga |
22829477 |
T |
|
| Q |
118 |
tttttatgaagagactcttctgttgtgtgct |
148 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
22829476 |
tttttgaaaagagactcttctgttgtgtgct |
22829446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 153 - 421
Target Start/End: Complemental strand, 22799132 - 22798864
Alignment:
| Q |
153 |
ataacttgtttataaacttataagcttgaaaatagaatttttgaaatattatatttggattgggaaagtaattatcgaaaattgaaaagtcattttatga |
252 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||||||| | || |||||| ||||| |||| | ||| || ||||| |||||||| |||| || |
|
|
| T |
22799132 |
ataacttgtttttaaacttataagctttaaaattaaatttttaagtgataatatttagattgagaaaatcattctctaaaatagaaaagtcgttttgcga |
22799033 |
T |
|
| Q |
253 |
ataattatgtgaaacttatttcaaatcttgtcaatcggaaagactagtgcattttcttgctctttttctatattgacattattgaagtccgaaatttact |
352 |
Q |
| |
|
|||||| ||| || || |||| || ||||||||| ||||||| | | | |||||||| || ||||| || ||||||||||| ||||| ||| ||||| |
|
|
| T |
22799032 |
ataattttgtaaacctaatttataagcttgtcaatgggaaagattggggaattttcttactgattttcaatgttgacattattaaagtctaaaacttact |
22798933 |
T |
|
| Q |
353 |
ttgatttaaagatcatgtgttgttcaattgttgaagattggaacaattattcatcactgctcttaaatt |
421 |
Q |
| |
|
||||||||||||| | |||||||| ||| | || |||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
22798932 |
ttgatttaaagatgaggtgttgtttgattttggaggattgggacagttattcatcaccgctcttaaatt |
22798864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 153 - 421
Target Start/End: Complemental strand, 22840423 - 22840155
Alignment:
| Q |
153 |
ataacttgtttataaacttataagcttgaaaatagaatttttgaaatattatatttggattgggaaagtaattatcgaaaattgaaaagtcattttatga |
252 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||| ||| | || |||||| ||||| |||| | ||| || ||||| ||||||||||||| ||| |
|
|
| T |
22840423 |
ataacttatttataaacttataagctttaaaattgaatgtttaagtaataatatttagattgagaaaatcattctctaaaatcgaaaagtcattttttga |
22840324 |
T |
|
| Q |
253 |
ataattatgtgaaacttatttcaaatcttgtcaatcggaaagactagtgcattttcttgctctttttctatattgacattattgaagtccgaaatttact |
352 |
Q |
| |
|
|||||| ||| || || |||| ||| |||||||| |||||| | | | |||||||| || ||||| || ||||||||||| ||||| ||| ||||| |
|
|
| T |
22840323 |
ataattttgtaaacctaatttaaaaatttgtcaatgcgaaagattggggaattttcttactgattttcaatgttgacattattaaagtctaaaacttact |
22840224 |
T |
|
| Q |
353 |
ttgatttaaagatcatgtgttgttcaattgttgaagattggaacaattattcatcactgctcttaaatt |
421 |
Q |
| |
|
|||||||||| || | |||||||| ||| ||| |||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
22840223 |
ttgatttaaatatgaggtgttgtttgatttgtgaggattgggacagttattcatcaccgctcttaaatt |
22840155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 376
Target Start/End: Complemental strand, 22817195 - 22816973
Alignment:
| Q |
153 |
ataacttgtttataaacttataagcttgaaaatagaattttt-gaaatattatatttggattgggaaagtaattatcgaaaattgaaaagtcattttatg |
251 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||| ||||||| | |||| |||||| ||||| |||| | ||| || ||||| ||||||||||||| |
|
|
| T |
22817195 |
ataatttgcttataaacttataagcttcaaaattgaattttaaggaata--atatttagattgagaaaatcattctctaaaatcgaaaagtcattttgca |
22817098 |
T |
|
| Q |
252 |
aataattatgtgaaacttatttcaaatcttgtcaatcggaaagactagtgcattttcttgctctttttctatattgacattattgaagtccgaaatttac |
351 |
Q |
| |
|
||||||| ||| || || |||| |||||||| |||| ||||| | | | | |||||||| || ||||| | ||||||||||| ||||| ||| |||| |
|
|
| T |
22817097 |
aataattttgtaaacctaatttaaaatcttgacaatgggaaatattggggaattttcttactgattttcggtgttgacattattaaagtctaaaacttac |
22816998 |
T |
|
| Q |
352 |
tttgatttaaagatcatgtgttgtt |
376 |
Q |
| |
|
|||||||||||||| | |||||||| |
|
|
| T |
22816997 |
tttgatttaaagatgaggtgttgtt |
22816973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 421
Target Start/End: Complemental strand, 22829691 - 22829586
Alignment:
| Q |
316 |
ttttctatattgacattattgaagtccgaaatttactttgatttaaagatcatgtgttgttcaattgttgaagattggaacaattattcatcactgctct |
415 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| |||||||||||||||||| | |||||||| ||| |||| |||||| ||| ||||||||||| ||||| |
|
|
| T |
22829691 |
ttttcaatgttgacattattaaagtctaaaacttactttgatttaaagatgaggtgttgtttgatttttgaggattgggacagttattcatcaccgctct |
22829592 |
T |
|
| Q |
416 |
taaatt |
421 |
Q |
| |
|
|||||| |
|
|
| T |
22829591 |
taaatt |
22829586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 22798635 - 22798541
Alignment:
| Q |
327 |
gacattattgaagtccgaaatttactttgatttaaagatcatgtgttgttcaattgttgaagattggaacaattattcatcactgctcttaaatt |
421 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||||||| | |||||||| ||| | || |||||| ||||||||||||||| |||||||||| |
|
|
| T |
22798635 |
gacattattaaagtataaaacttactttgatttaaagatgaggtgttgtttgattttggaggattgggacaattattcatcaccactcttaaatt |
22798541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 421
Target Start/End: Original strand, 21545272 - 21545365
Alignment:
| Q |
328 |
acattattgaagtccgaaatttactttgatttaaagatcatgtgttgttcaattgttgaagattggaacaattattcatcactgctcttaaatt |
421 |
Q |
| |
|
|||||||| ||||| |||||||||| |||| ||| ||| ||||||||| ||| ||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
21545272 |
acattattaaagtcaataatttactttaatttgaagttcaggtgttgttcgatttgtgaagattggaacaatttttcgccattgctcttaaatt |
21545365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 21519255 - 21519318
Alignment:
| Q |
52 |
tttgaagctttggtcttgctgccaatatttgttaattgattgattagatttgtgtgtagaatga |
115 |
Q |
| |
|
||||||| ||||||||| || | || |||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
21519255 |
tttgaaggtttggtctttctactaaaatttattaaccgattgattagatttgtgtgtagaatga |
21519318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 413
Target Start/End: Original strand, 21534642 - 21534752
Alignment:
| Q |
303 |
attttcttgctctttttctatattgacattattgaagtccgaaatttactttgatttaaagatcatgtgttgttcaattgttgaagattggaacaattat |
402 |
Q |
| |
|
|||||||||| |||||| ||||||| ||| || || || ||||||||||||||||| ||||| |||||| || ||| |||||||| ||| | ||| |
|
|
| T |
21534642 |
attttcttgccgtttttcaatattgatattgttaaaatcttgaatttactttgatttaaggatcaggtgttgctcgattcgtgaagatttgaatagctat |
21534741 |
T |
|
| Q |
403 |
tcatcactgct |
413 |
Q |
| |
|
||||||||||| |
|
|
| T |
21534742 |
tcatcactgct |
21534752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 21535218 - 21535268
Alignment:
| Q |
56 |
aagctttggtcttgctgccaatatttgttaattgattgattagatttgtgt |
106 |
Q |
| |
|
|||||||||||| ||| | || |||| |||||||||||||||||||||||| |
|
|
| T |
21535218 |
aagctttggtctagctactaagatttattaattgattgattagatttgtgt |
21535268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 22829854 - 22829813
Alignment:
| Q |
153 |
ataacttgtttataaacttataagcttgaaaatagaattttt |
194 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
22829854 |
ataacttgtttataaacttataagttttaaaattgaattttt |
22829813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 153 - 420
Target Start/End: Original strand, 5619585 - 5619851
Alignment:
| Q |
153 |
ataacttgtttataaacttataagcttgaaaatagaatttttgaaatattatatttggattgggaaagtaattatcgaaaattgaaaagtcattttatga |
252 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||| |||||||||||| |
|
|
| T |
5619585 |
ataacttagttataaacttataagcttaaaaatagaatttttgaaatattatatttggattgggaatgtagttatctaacattgaaa-gtcattttatga |
5619683 |
T |
|
| Q |
253 |
ataattatgtgaaacttatttcaaatcttgtcaatcggaaagactagtgcattttcttgctctttttctatattgacattattgaagtccgaaatttact |
352 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
5619684 |
ctatttatgtgaaactcatttcaaatcttgtcaatcggaaagactagtacattttcttggtctttttctatattgaaattattgaagtccaaaatttact |
5619783 |
T |
|
| Q |
353 |
ttgatttaaagatcatgtgttgttcaattgttgaagattggaacaattattcatcactgctcttaaat |
420 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || ||||| |||||||||| |||| |||||||||| |
|
|
| T |
5619784 |
ttgatttaatgatcatgtgttgttcaattgtcgaggattgaaacaattatttatcatcgctcttaaat |
5619851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 162 - 408
Target Start/End: Original strand, 5596672 - 5596917
Alignment:
| Q |
162 |
ttataaacttataagcttgaaaatagaatttttgaaatattatatttggattgggaaagtaattatcgaaaattgaaaagtcattttatgaataattatg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| || ||||||| |||||||||||| || ||||| |
|
|
| T |
5596672 |
ttataaacttataagcttgaaaatagaatttttgaaatattatatttggattggggatgtagttatctaacattgaaa-gtcattttatgactatttatg |
5596770 |
T |
|
| Q |
262 |
tgaaacttatttcaaatcttgtcaatcggaaagactagtgcattttcttgctctttttctatattgacattattgaagtccgaaatttactttgatttaa |
361 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| || |||||| ||| |||||||||||||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
5596771 |
tgaaactcatttcaaatcttgtcaattggaaagactggtacatttttttggtctttttctatattgaaattatcgaagtccaaaatttactttgatttaa |
5596870 |
T |
|
| Q |
362 |
agatcatgtgttgttcaattgttgaagattggaacaattattcatca |
408 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
5596871 |
tgatcatgtgttgttcaattgtcgaggattcaaacaattattcatca |
5596917 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 5596488 - 5596618
Alignment:
| Q |
18 |
tattttgattaaggtatgaattttcatatgatgctttgaagctttggtcttgctgccaatatttgttaattgattgattagatttgtgtgtagaatgaga |
117 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
5596488 |
tatttcgattaagggttgaactttcatatgatgctttgaagctttgggattgctactaatatttgttaactgattgattagatttgtgtgtaaaatgaga |
5596587 |
T |
|
| Q |
118 |
tttttatgaagagactcttctgttgtgtgct |
148 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
5596588 |
tttttgaaaagagactcttctgttgtgtgct |
5596618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 421
Target Start/End: Original strand, 5596373 - 5596478
Alignment:
| Q |
316 |
ttttctatattgacattattgaagtccgaaatttactttgatttaaagatcatgtgttgttcaattgttgaagattggaacaattattcatcactgctct |
415 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| |||||||||||||||||| | |||||||| |||| ||| |||||| ||| ||||||||||| ||||| |
|
|
| T |
5596373 |
ttttcaatgttgacattattaaagtctaaaacttactttgatttaaagatgaggtgttgtttgattggtgaggattgggacagttattcatcaccgctct |
5596472 |
T |
|
| Q |
416 |
taaatt |
421 |
Q |
| |
|
|||||| |
|
|
| T |
5596473 |
taaatt |
5596478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 5619457 - 5619528
Alignment:
| Q |
51 |
ctttgaagctttggtcttgctgccaatatttgttaattgattgattagatttgtgtgtagaatgagattttt |
122 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
5619457 |
ctttgaagctttgggattgctactaatatttgttaaccaattgattagatttgtgtatagaatgagattttt |
5619528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 5596210 - 5596251
Alignment:
| Q |
153 |
ataacttgtttataaacttataagcttgaaaatagaattttt |
194 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
5596210 |
ataacttgtttataaacttataagttttaaaattgaattttt |
5596251 |
T |
|
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