View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5398_low_2 (Length: 601)
Name: NF5398_low_2
Description: NF5398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5398_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Complemental strand, 23697413 - 23696842
Alignment:
| Q |
18 |
ctatccagttgcacacttataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacctgcggataaaatcaatatgccaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
23697413 |
ctatccagttgcacacttataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacctgcggataaaaacaatatgacaa |
23697314 |
T |
|
| Q |
118 |
attttttcttacaaatcaaagcagaataactaatatttaagcaagcacccaaaataaaaatgcaaaagtagaattcttaacaaaagagaattgtctatac |
217 |
Q |
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| T |
23697313 |
atttttttttacaaatcaaagcagaataactaatatttaagcaagcaccaaaaataaaaatgcaaaagtagaattcttaacaaaagagaattgtctatac |
23697214 |
T |
|
| Q |
218 |
ctgcatgaaatgcgagtgcacccctcaattttctccacatagaagctgcactttggacatcttttccatctcttgttcttagcaagttccatggccatta |
317 |
Q |
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| T |
23697213 |
ctgcatgaaatgcgagtacatccctcaattttctccacatagaagctgcactttggacatcttttccatctcttgttcttagcaagttccatggccatta |
23697114 |
T |
|
| Q |
318 |
gatctttcctccctcgctcgccgtcttccaagctttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtgcacaaaataatctatt |
417 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23697113 |
gatctttcctccctcgctcgccatcttccaagctttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtgcacaaaataatctatt |
23697014 |
T |
|
| Q |
418 |
acaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtaaaatttttgtgaatctaac |
517 |
Q |
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| T |
23697013 |
acaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtacaatttttgtgaatctaac |
23696914 |
T |
|
| Q |
518 |
accatattctcacaaagtgcctttccccatatctcaaacacatcctttggtataagggtgctacaatgatga |
589 |
Q |
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| T |
23696913 |
accatattctcacaaagtgcctttccccatctctcaaacacatcctttggtataagggtgctacaattatga |
23696842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 181 - 569
Target Start/End: Original strand, 23700682 - 23701070
Alignment:
| Q |
181 |
aaaagtagaattcttaacaaaagagaattgtctatacctgcatgaaatgcgagtgcacccctcaattttctccacatagaagctgcactttggacatctt |
280 |
Q |
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| T |
23700682 |
aaaagtagaatttttaacaaaagagaattgaatatacctgcatgaaatgcgagtacatcccacaattttttccacatagaagccacactttggacatctt |
23700781 |
T |
|
| Q |
281 |
ttccatctcttgttcttagcaagttccatggccattagatctttcctccctcgctcgccgtcttccaagctttgaaactctctacaatcaacaccagagt |
380 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| || ||||||||||||| | || |
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| T |
23700782 |
ttccatctcttgttctttgcaagttccatggccattagatcttccatccctcgctcgccgtctttcaagctttgaaacactttacaatcaacacctgtgt |
23700881 |
T |
|
| Q |
381 |
gccatgaaaccttacattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaaca |
480 |
Q |
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| T |
23700882 |
gccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaaca |
23700981 |
T |
|
| Q |
481 |
atcattaaaaggacagtaaaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatatctcaaacacatcctttggta |
569 |
Q |
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||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||| |
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| T |
23700982 |
atcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgaattttcccatctatcaaacacatcctttggta |
23701070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 243 - 569
Target Start/End: Complemental strand, 23695057 - 23694731
Alignment:
| Q |
243 |
caattttctccacatagaagctgcactttggacatcttttccatctcttgttcttagcaagttccatggccattagatctttcctccctcgctcgccgtc |
342 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |
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| T |
23695057 |
caattttttccacatagaagccacactttggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcgctcaccatc |
23694958 |
T |
|
| Q |
343 |
ttccaagctttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtgcacaaaataatctattacaatgaggacactcagaaacggtt |
442 |
Q |
| |
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|| ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| || ||||||| |||||| ||||| || ||| | || |
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| T |
23694957 |
tttcaagcttagaaactctttacaatcaacacctatgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtc |
23694858 |
T |
|
| Q |
443 |
acaacttcctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtaaaatttttgtgaatctaacaccatattctcacaaagtgcctttc |
542 |
Q |
| |
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|||| | ||| ||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||| |
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| T |
23694857 |
acaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcatttt |
23694758 |
T |
|
| Q |
543 |
cccatatctcaaacacatcctttggta |
569 |
Q |
| |
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||||| | ||||||||||||||||||| |
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| T |
23694757 |
cccatctatcaaacacatcctttggta |
23694731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 23700587 - 23700648
Alignment:
| Q |
36 |
ataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacctgc |
97 |
Q |
| |
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||||||||| | | ||||||||| || ||||| ||||||||||||||||| |||||||||| |
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| T |
23700587 |
ataatgggactgattattccaaggagaaccacagccatagcaaaattgattgccacacctgc |
23700648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 181 - 500
Target Start/End: Original strand, 8148820 - 8149144
Alignment:
| Q |
181 |
aaaagtagaattcttaacaaaagagaat--tgtctatacctgcatgaaatgcgagtgcacccctcaattttctccacatagaagctgcactttggacatc |
278 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||||||||| |||| || | || || | |||| |||||||||||| |||| ||||||| | |
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| T |
8148820 |
aaaagtagaattcttaacataagaaaatattgtctatacctgcatctaatgtgattacatccaccttttttttccacatagaagttgcatcttggacacc |
8148919 |
T |
|
| Q |
279 |
ttttccatctcttgttcttagcaagttccatggccattagatctt--tcctccctcgctc-gccgtcttccaagctttgaaactctctacaatcaacacc |
375 |
Q |
| |
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|||||||| |||| |||||||||||||||| |||||||||||| |||| ||||| | ||| | || ||| ||||||||||||||||||| || | |
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| T |
8148920 |
ttttccatttctttttcttagcaagttccagagccattagatctaaatccttcctcggaccgccttttttcaaaatttgaaactctctacaatcgacttc |
8149019 |
T |
|
| Q |
376 |
agagtgccatgaaaccttacattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagct |
475 |
Q |
| |
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| |||||||| ||| | ||||||||| || |||| ||||| |||||| ||||| || | || | |||||||| | | |||||||||||||||||||| |
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| T |
8149020 |
cgtgtgccatggaacttgacattgtgcgcagaatagtctatgacaatgtggacattccgtaattctcacaacttcatttccatcattcaccaacatagct |
8149119 |
T |
|
| Q |
476 |
gaacaatcattaaaaggacagtaaa |
500 |
Q |
| |
|
|||||||| ||||||||||| |||| |
|
|
| T |
8149120 |
gaacaatccttaaaaggacaataaa |
8149144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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