View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5398_low_4 (Length: 440)
Name: NF5398_low_4
Description: NF5398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5398_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 421
Target Start/End: Complemental strand, 39647371 - 39646960
Alignment:
| Q |
8 |
gagaagaaaaacaaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtg |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39647371 |
gagaagcaaaacaaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatacagtg |
39647272 |
T |
|
| Q |
108 |
caccagcaaattatcctttgtcggtaagctattctgaaagagtctccaagccaaaatcgaagggaacctgcttatgtcaaatgaaatatgtagtagcatc |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||| |
|
|
| T |
39647271 |
caccaacaaattatcctttgtcggtaagctattctgaaagagtctccaagccaaaatcgaagggaacctgcttatgctaattgaagtctgtagtagcatc |
39647172 |
T |
|
| Q |
208 |
agacttctcacgacaggttatctgcttatcccttgaagatttcgattttggaggggtcgctccaatttgaatacatactgttgcggcccctcaaattgga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39647171 |
agacttctcacgacaggttatctgcttatcccttgaagatttcgattttggaggagccgctccaatttgaatacatactgttgcggcccctcaaattgga |
39647072 |
T |
|
| Q |
308 |
gggtcggaacagttgaaaactattcgggagtactaaagtacgatcaaacgatacgaccttacaccatcaaatccaaaggttcaaatattatgcccctaaa |
407 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
39647071 |
gggccgcaacagttgaaaactattcgggagtactaaagtacgatcaaacgatacgaccttacaccttcggatccaaaggttc--atattatgcccctaaa |
39646974 |
T |
|
| Q |
408 |
aaagtaacagtccc |
421 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39646973 |
aaagtaacagtccc |
39646960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 23826757 - 23826551
Alignment:
| Q |
8 |
gagaagaaaaacaaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtg |
107 |
Q |
| |
|
|||||| | ||||||||||| || ||| ||||||||||||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||| |
|
|
| T |
23826757 |
gagaagcacaacaaggacaaaatgaaaacaaatgttgagcagtttccaaaccaccacaccaagtcacacataattgattgtcgtgagaaagaata-ccac |
23826659 |
T |
|
| Q |
108 |
caccagcaaattatcctttgtcggtaagctattctgaaagagtctccaagccaaaatcg--------aagggaacctgcttatgtcaaatgaaatatgta |
199 |
Q |
| |
|
||||| |||||||||||||||| |||| || || || |||||||||||||||||||||| |||| |||||||||||| |||||||| |||||| |
|
|
| T |
23826658 |
caccaacaaattatcctttgtcagtaacctgttttgtaagagtctccaagccaaaatcgaaaccttcaaggaaacctgcttatgccaaatgaagtatgta |
23826559 |
T |
|
| Q |
200 |
gtagcatc |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
23826558 |
gtagcatc |
23826551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 9605748 - 9605546
Alignment:
| Q |
15 |
aaaacaaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtgcaccagc |
114 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||| || | |||||| | |
|
|
| T |
9605748 |
aaaacagggacaagacaaaaacaaatgttgagcaatctccagaccaccacacccagtcacacataactgattatcgtgagaaagagtaccgcgcaccatc |
9605649 |
T |
|
| Q |
115 |
aaattatcctttgtcggtaagctattctgaaagagtctccaagccaaaatcg--------aagggaacctgcttatgtcaaatgaaatatgtagtagcat |
206 |
Q |
| |
|
||||||||||| || |||| || ||| ||| |||||||||||||||||||| || |||||||||||||| |||||||| | ||||||| ||| |
|
|
| T |
9605648 |
aaattatccttcatcagtaacctgttccgaatgagtctccaagccaaaatcgagaccttcaaaggaacctgcttatgccaaatgaagtttgtagtaacat |
9605549 |
T |
|
| Q |
207 |
cag |
209 |
Q |
| |
|
||| |
|
|
| T |
9605548 |
cag |
9605546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 9833319 - 9833117
Alignment:
| Q |
15 |
aaaacaaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtgcaccagc |
114 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||| || | |||||| | |
|
|
| T |
9833319 |
aaaacagggacaagacaaaaacaaatgttgagcaatctccagaccaccacacccagtcacacataactgattatcgtgagaaagagtaccgcgcaccatc |
9833220 |
T |
|
| Q |
115 |
aaattatcctttgtcggtaagctattctgaaagagtctccaagccaaaatcg--------aagggaacctgcttatgtcaaatgaaatatgtagtagcat |
206 |
Q |
| |
|
||||||||||| || |||| || ||| ||| |||||||||||||||||||| || |||||||||||||| |||||||| | ||||||| ||| |
|
|
| T |
9833219 |
aaattatccttcatcagtaacctgttccgaatgagtctccaagccaaaatcgagaccttcaaaggaacctgcttatgccaaatgaagtttgtagtaacat |
9833120 |
T |
|
| Q |
207 |
cag |
209 |
Q |
| |
|
||| |
|
|
| T |
9833119 |
cag |
9833117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 32734369 - 32734525
Alignment:
| Q |
8 |
gagaagaaaaacaaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtg |
107 |
Q |
| |
|
|||||| |||||| |||||||| |||| |||||||| || |||||||| ||| || ||||| ||||||||||||||||||| ||||||||||||| | | |
|
|
| T |
32734369 |
gagaagcaaaacagggacaagacaaaaacaaatgtttagtagtctccagaccgccgtacccagtcacacataactgattgtcatgagaaagaatatcgcg |
32734468 |
T |
|
| Q |
108 |
caccagcaaattatcctttgtcggtaagctattctgaaagagtctccaagccaaaat |
164 |
Q |
| |
|
||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
32734469 |
caccaacaaattatcctttgtcggtaacctgttccgaaagagtctccaagccaaaat |
32734525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 24957475 - 24957583
Alignment:
| Q |
57 |
accaccacacccaatcacacataactgattgtcgtgagaaagaatatagtgcaccagcaaattatcctttgtcggtaagctattctgaaagagtctccaa |
156 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
24957475 |
accaccacacccagtcacacataactgattgtcgtgagaaagaataccacgctccaacaaattatcctttgtcggtaacctattttgaaagagtctccaa |
24957574 |
T |
|
| Q |
157 |
gccaaaatc |
165 |
Q |
| |
|
|||| |||| |
|
|
| T |
24957575 |
gccagaatc |
24957583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 2816760 - 2816601
Alignment:
| Q |
8 |
gagaagaaaaacaaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtg |
107 |
Q |
| |
|
||||| ||||||| || ||||| |||| |||| |||||||||||||| ||||||||||| | ||||||||||||| ||||| |||||||||||| | | |
|
|
| T |
2816760 |
gagaacaaaaacaggggcaagacaaaaataaatattgagcagtctccagaccaccacacc-agtcacacataactggttgtcatgagaaagaataccgcg |
2816662 |
T |
|
| Q |
108 |
caccagcaaattatcctttgtcggtaagctattctgaaagagtctccaagccaaaatcgaa |
168 |
Q |
| |
|
||||| ||||||||||||||| | ||| || || |||||||||||||| ||||||||||| |
|
|
| T |
2816661 |
caccaacaaattatcctttgttgataacctgtttcgaaagagtctccaaaccaaaatcgaa |
2816601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 18298937 - 18299059
Alignment:
| Q |
8 |
gagaagaaaaacaaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtg |
107 |
Q |
| |
|
|||||| |||| | ||||||||||||| |||||||||||| ||||| | | ||||||||||||| ||| ||| |||||||| |||||||||||| || |
|
|
| T |
18298937 |
gagaagcaaaaaagggacaagataaaaacaaatgttgagccgtctctagaacaccacacccaattacatataggtgattgtcatgagaaagaataccgta |
18299036 |
T |
|
| Q |
108 |
caccagcaaattatcctttgtcg |
130 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
18299037 |
caccaataaattatcctttgtcg |
18299059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 30626260 - 30626409
Alignment:
| Q |
19 |
caaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtgcaccagcaaat |
118 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||| || || |||||| |||||||| |||||||||| | |||||||| ||| | | | ||| | || |
|
|
| T |
30626260 |
caaggacaagacgaaaactaatgttgagcagtctctaatcctccacacacaatcacatataactgattattgtgagaaataatgttgcacgccattagat |
30626359 |
T |
|
| Q |
119 |
tatcctttgtcggtaagctattctgaaagagtctccaagccaaaatcgaa |
168 |
Q |
| |
|
||||||||||||||| || || ||| ||||||||| |||||||||||| |
|
|
| T |
30626360 |
tatcctttgtcggtaccctgttacgaatgagtctccaggccaaaatcgaa |
30626409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 6458621 - 6458559
Alignment:
| Q |
39 |
atgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaat |
101 |
Q |
| |
|
||||||||||||||| || || ||||||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
6458621 |
atgttgagcagtctcgaagcctccacacccagtcacgaataactgattgtcgttagaaagaat |
6458559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 38774265 - 38774407
Alignment:
| Q |
22 |
ggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtgcaccagcaaattat |
121 |
Q |
| |
|
|||||||| |||| || |||||||| |||||| || || |||| |||||||||||||| | ||| |||||||||| ||| | |||| ||| || ||||| |
|
|
| T |
38774265 |
ggacaagacaaaaacagatgttgagtagtctctaaccctccacgcccaatcacacatagtttattatcgtgagaaacaatgtcgtgcgccaccatattat |
38774364 |
T |
|
| Q |
122 |
cctttgtcggtaagctattctgaaagagtctccaagccaaaat |
164 |
Q |
| |
|
|||| ||| | || || ||||||| ||||||||| | |||||| |
|
|
| T |
38774365 |
ccttcgtcagcaacctgttctgaaggagtctccatgtcaaaat |
38774407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 40413883 - 40413751
Alignment:
| Q |
19 |
caaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtgcaccagcaaat |
118 |
Q |
| |
|
||||||||||| ||||| | |||||||||| |||| || || |||||| | ||||||||||||| || | |||||||| || | |||| ||| ||||| |
|
|
| T |
40413883 |
caaggacaagaaaaaat-atatgttgagcaatctctaaccctccacactgagtcacacataactggttattgtgagaaataacgttgtgcgccatcaaat |
40413785 |
T |
|
| Q |
119 |
tatcctttgtcggtaagctattctgaaagagtct |
152 |
Q |
| |
|
|||| || |||||||| |||||||||| |||||| |
|
|
| T |
40413784 |
tatctttcgtcggtaaactattctgaaggagtct |
40413751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 17763287 - 17763192
Alignment:
| Q |
39 |
atgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtgcaccagcaaattatcctttgtcggtaa |
134 |
Q |
| |
|
|||||||||||| || || || ||||||||| ||||||||||||| || |||||||||| ||| | | | ||| || ||||||||| |||||||| |
|
|
| T |
17763287 |
atgttgagcagtatctaaccctccacacccagtcacacataactgcttatcgtgagaaataatgttgcgtgccatcagattatccttcgtcggtaa |
17763192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 19064607 - 19064512
Alignment:
| Q |
39 |
atgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtgcaccagcaaattatcctttgtcggtaa |
134 |
Q |
| |
|
|||||||||||| || || || ||||||||| ||||||||||||| || |||||||||| ||| | | | ||| || ||||||||| |||||||| |
|
|
| T |
19064607 |
atgttgagcagtatctaaccctccacacccagtcacacataactgcttatcgtgagaaataatgttgcgtgccatcagattatccttcgtcggtaa |
19064512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 44887841 - 44887902
Alignment:
| Q |
39 |
atgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaa |
100 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||| |||||| | ||| ||||| |||||||||| |
|
|
| T |
44887841 |
atgttgagcagtctcaaaatcaccacaaccaaccacacaaagctggttgtcatgagaaagaa |
44887902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 20003872 - 20004032
Alignment:
| Q |
8 |
gagaagaaaaacaaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgattgtcgtgagaaagaatatagtg |
107 |
Q |
| |
|
|||||| ||| ||||||||||| || | || |||||||| |||||| || || |||||||| |||| |||| ||||| |||| ||||| ||| | ||| |
|
|
| T |
20003872 |
gagaagcaaagcaaggacaagacaagaacatatgttgagaagtctctaacccttcacacccagtcactcatagctgatcatcgttagaaataatgtcgtg |
20003971 |
T |
|
| Q |
108 |
caccagcaaattatcctttgtcggtaagctattctgaaagagtctccaagccaaaatcgaa |
168 |
Q |
| |
|
| ||| || ||||||||| |||| ||| | ||| ||| |||| ||||||||||||||||| |
|
|
| T |
20003972 |
cgccatcatattatccttcgtcgataacttgttccgaaggagtttccaagccaaaatcgaa |
20004032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 32191378 - 32191445
Alignment:
| Q |
19 |
caaggacaagataaaatcaaatgttgagcagtctccaaaccaccacacccaatcacacataactgatt |
86 |
Q |
| |
|
||||||||||| || | || ||||||||||||||| || | ||||||||| |||||||||||||||| |
|
|
| T |
32191378 |
caaggacaagacaataacagatgttgagcagtctctaactctccacacccagtcacacataactgatt |
32191445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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