View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5398_low_5 (Length: 410)
Name: NF5398_low_5
Description: NF5398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5398_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 5228769 - 5228389
Alignment:
| Q |
13 |
aacatatacataattttggttcatgcttggatctatctgtaaaatgaataaataaaagagaaaggaaagcaataatttggaaagnnnnnnnnnnnnnnnn |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5228769 |
aacatatacataattttggttcatgcttggatctatctgtaaaatgaataaataaaagagaaaggaaagcaataatttggaaa--acaaaaaaacaaaaa |
5228672 |
T |
|
| Q |
113 |
ctaatgtttgtatggaggtagtggagtggaatgagtgtacctcgggtgtgcttcttggatagtggatagagccagatatcaaaattcttctttgtccatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5228671 |
ctaatgtttgtatggaggtagtggagtggaatgagtgtacctcgggtgtgcttcttggatagtggatagagccagatatcaaaattcttctttgtccatc |
5228572 |
T |
|
| Q |
213 |
aatcacaagggctttgtgatcataacttactgaagcagtaacaccacaaacccacagacacaataataaaatcaaccctagcatgtgaaactctttttgc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5228571 |
aatcacaagggctttgtgatcataacttactgaagcagtaacaccacaaacccacaaacacaataataaaatcaaccccagcatgtgaaactctttttgc |
5228472 |
T |
|
| Q |
313 |
attgttaaactctccatcatcaaaactcttgaatagctgaataattgattcagctatttttctcaacccaacaatggtgtgtcctttgct |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5228471 |
attgttaaactctccatcatcaaaactcttgaatagctga-------attcagctatttttctcaacccaacaatggtgtgtcttttgct |
5228389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 17124004 - 17123912
Alignment:
| Q |
145 |
gagtgtacctcgggtgtgcttcttggatagtggatagagccagatatcaaaattcttctttgtccatcaatcacaagggctttgtgatcataa |
237 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||| | ||||| |||||||| ||||| ||||||||| |
|
|
| T |
17124004 |
gagtgtacctgaggtgtgcttctaggataatggatagaaccagagatcaaaattcttctctttccattaatcacaatagctttatgatcataa |
17123912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University