View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5399-Insertion-2 (Length: 626)
Name: NF5399-Insertion-2
Description: NF5399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5399-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 550
Target Start/End: Complemental strand, 29214068 - 29213526
Alignment:
| Q |
10 |
aattaacttgccttattacaaaatttagtattccataaagagttcgtcataaaaataaaaacaacaaaatactaaagatattcatcgatatatgtttgta |
109 |
Q |
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| T |
29214068 |
aattaacttgccttattacaaaatttagtattccataaagagttcgtcataaaaataaaaacaacaaaatactaaagatattcatcgatacatatttgta |
29213969 |
T |
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| Q |
110 |
tgttccgatacgtgtcgagagagcattcgatgattaaattatatttaaaaaattttgtccgatacatttcagatacgttcagaatacgcgagaaatacat |
209 |
Q |
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| T |
29213968 |
tgccccgatacgtgtcgagagagcattcgatgattaaattatatttaaaaaaatttgtccgatacatttcagatacgttcagaatacgcgagaaatacat |
29213869 |
T |
|
| Q |
210 |
catagattctggtacgcacaagatacataatgtttatattannnnnnnnnnnnnnnnnnnnnnnagaaaaaagaggaaacatattaaaagtacatatcac |
309 |
Q |
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| T |
29213868 |
catagattctggtacgcacaagatacataatgtttatattattttgttttttcttttttgttttagaaaaaagaggaaacatattaaaagtacatatcac |
29213769 |
T |
|
| Q |
310 |
caccnnnnnnntattaaaagcacatacgtgtgaaataattaacttgccttattnnnnnnntattagaaggacatacgtgtgaaataattaacttgcctta |
409 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29213768 |
caccaaaaaaatattaaaagcacatacgtgtgaaataattaacttgccttattaaaaaaatattagaaggacatacgtgtgaaataattaacttgcctta |
29213669 |
T |
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| Q |
410 |
tttttgtc--nnnnnnnnntaaattaacttgccttattaaaaagtgtagtcttctagaagggttcgtcgtaaaactaaaattatagaagtggtgccccaa |
507 |
Q |
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| T |
29213668 |
tttttgtcaaaaaaaaaaaaaaattaacttgccttattaaaaagtgtagtcttctagaagggttcgtcgtaaaactaaaattatagaagtggtgccccaa |
29213569 |
T |
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| Q |
508 |
tgtatatttgcgagcgacgatggttttctcacatcacctttta |
550 |
Q |
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| T |
29213568 |
tgtatatttgcgagcgacgatgattttctcacatcacctttta |
29213526 |
T |
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