View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400-Insertion-10 (Length: 287)

Name: NF5400-Insertion-10
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400-Insertion-10
NF5400-Insertion-10
[»] scaffold0016 (1 HSPs)
scaffold0016 (6-287)||(202728-203010)


Alignment Details
Target: scaffold0016 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 287
Target Start/End: Original strand, 202728 - 203010
Alignment:
Q  6 cacttgttcaccttaaaaactaccacgcatatgtcgaatgagaacaaattgaacaggtcttattctaccactaattattattttatatatatgcacaagt 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  202728 cacttgttcaccttaaaaactaccac-catatgtcgaatgagaacaaattgaacaggtcttattctaccactaattattattttatatatatgcacaact 202826  T
Q  106 catgacttgcataataaaatccagtaagtgaagagaaaacacctaccatg--taatgatggtgaccatatatatatcctcgttgccatgtgcctaatttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  202827 catgacttgcataataaaatccagtaagtgaagagaaaacacctaccatgcataatgatggtgaccatatatatatcctcgttgccatgtgcctaatttt 202926  T
Q  204 caattctttcatattcaaacgcattggtatatttttccttaaaaatcgttttcatagacccaaaaatgagaaatttccgtgtac 287  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  202927 caattctttcataatcacacgcattggtatatttttccctaaaaatcgttttcatagacccaaaaatgagaaatttccgtgtac 203010  T

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