View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400-Insertion-11 (Length: 224)
Name: NF5400-Insertion-11
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400-Insertion-11 |
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| [»] chr1 (5 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 2304430 - 2304214
Alignment:
| Q |
8 |
aatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttgtttgatgtgaggctagaacattca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2304430 |
aatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagttaaggaagtttagcttgtttgatgtgaggctagaacattca |
2304331 |
T |
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| Q |
108 |
atcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatggggtttttgatgtcattgatttac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2304330 |
atcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattatgtcaagaagcggagatgatggggtttttgatgtcattgatttac |
2304231 |
T |
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| Q |
208 |
atttggtttcgcttcca |
224 |
Q |
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||||||||||||||||| |
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| T |
2304230 |
atttggtttcgcttcca |
2304214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 34990773 - 34990980
Alignment:
| Q |
10 |
tgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttgtttgatgtgaggctagaacattcaat |
109 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||| |||||| |||||||||| | |||||||| |
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| T |
34990773 |
tgaaaattggtaagggtggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgaatgatgtgagggcaagacattcaag |
34990872 |
T |
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| Q |
110 |
cgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatggggtttttgatgtcattgatttacat |
209 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| |||||| ||||| |||| ||||||||||||| | ||| |
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| T |
34990873 |
cgctttatcttcctcactgaatgagatgcgacacttggagaaattacgcattgtgtcaagtagcggatatgatatggttcatgatgtcattgatatgcat |
34990972 |
T |
|
| Q |
210 |
ttggtttc |
217 |
Q |
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|||||||| |
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| T |
34990973 |
ttggtttc |
34990980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 34983944 - 34984158
Alignment:
| Q |
10 |
tgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttgtttgatgtgaggctagaacattcaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | ||||||| ||| |||| |||||||| | |
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| T |
34983944 |
tgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaagacagttaaggaagttgaccttgttttatgcgagggcagaacattttag |
34984043 |
T |
|
| Q |
110 |
cgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatggggtttttgatgtcattgatttacat |
209 |
Q |
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||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| || | | ||||| | || ||||||||||||||||||| |
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| T |
34984044 |
cgctttatcttcctcattgaatgagatgcgacacttagaaaaattatgcattgtgtcaggatgggaagatggttcttattatgatgtcattgatttacat |
34984143 |
T |
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| Q |
210 |
ttggtttcgcttcca |
224 |
Q |
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|||||||||| |||| |
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| T |
34984144 |
ttggtttcgcctcca |
34984158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 34976897 - 34977111
Alignment:
| Q |
10 |
tgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttgtttgatgtgaggctagaacattcaat |
109 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| | || |||| ||||||||| ||||||||| |||| ||| ||||||||||| |
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| T |
34976897 |
tgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgtaagggcagaacattcaag |
34976996 |
T |
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| Q |
110 |
cgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatggggtttttgatgtcattgatttacat |
209 |
Q |
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|||| ||| |||||| ||||||||||| ||||| |||||| |||| |||||||||| ||| ||||| || | ||||||||||||||||||| || |
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| T |
34976997 |
cgctctatattcctcactgaatgagatgaaacacttggagaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagat |
34977096 |
T |
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| Q |
210 |
ttggtttcgcttcca |
224 |
Q |
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|||||||||| |||| |
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| T |
34977097 |
ttggtttcgcctcca |
34977111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 34984241 - 34984274
Alignment:
| Q |
131 |
tgagatgcgacactcggagaaattatgcattgtg |
164 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
34984241 |
tgagatgcgacacttggagaaattatgcattgtg |
34984274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 40581454 - 40581668
Alignment:
| Q |
10 |
tgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttgtttgatgtgaggctagaacattcaat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||| ||| |||| |||||||| | |
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| T |
40581454 |
tgaaaattggtaagggtggaatagagttaattaaagagttgagaaagctaaggcagttaaggaagttgaacttgttttatgcgagggcagaacattttag |
40581553 |
T |
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| Q |
110 |
cgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattgtgtcaagaagcggagatgatggggtttttgatgtcattgatttacat |
209 |
Q |
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||||||||||||||| ||||||||||||||||||| | | |||||| ||||||| ||| || | ||| | ||| |||| ||||||||||||||||||| |
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| T |
40581554 |
cgctttatcttcctcattgaatgagatgcgacacttgaaaaaattaagcattgtatcaggatggggacaagattttgtttatgatgtcattgatttacat |
40581653 |
T |
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| Q |
210 |
ttggtttcgcttcca |
224 |
Q |
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|||||||||| |||| |
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| T |
40581654 |
ttggtttcgcctcca |
40581668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 22619814 - 22619678
Alignment:
| Q |
26 |
tggaatagagttaattaaagagttgggaaagctaaggcagtcaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatcttcctcg |
125 |
Q |
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|||||||||||||||||| |||||||||||| | ||||||| |||||| || | ||| ||| ||| || ||||||| || ||||||||||||| |
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| T |
22619814 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
22619715 |
T |
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| Q |
126 |
ttgaatgagatgcgacactcggagaaattatgcattg |
162 |
Q |
| |
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||||||||| ||||||||| ||||||| || |||||| |
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| T |
22619714 |
ttgaatgagctgcgacacttggagaaactacgcattg |
22619678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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