View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400-Insertion-12 (Length: 114)

Name: NF5400-Insertion-12
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400-Insertion-12
NF5400-Insertion-12
[»] chr4 (11 HSPs)
chr4 (8-114)||(23868710-23868816)
chr4 (8-114)||(24307201-24307307)
chr4 (15-114)||(23408741-23408840)
chr4 (15-114)||(23453573-23453672)
chr4 (15-114)||(23402052-23402151)
chr4 (15-114)||(23415910-23416009)
chr4 (15-114)||(23885805-23885904)
chr4 (15-114)||(26435782-26435881)
chr4 (15-114)||(26832713-26832812)
chr4 (15-114)||(26434002-26434101)
chr4 (15-114)||(34662242-34662341)
[»] chr1 (2 HSPs)
chr1 (15-114)||(41670378-41670477)
chr1 (15-112)||(40795749-40795846)
[»] chr8 (1 HSPs)
chr8 (14-91)||(29684701-29684778)
[»] chr7 (1 HSPs)
chr7 (12-91)||(40180468-40180547)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 1e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 23868816 - 23868710
Alignment:
Q  8 cattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  23868816 cattattcccatggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgctt 23868717  T
Q  108 ctcttct 114  Q
    |||||||    
T  23868716 ctcttct 23868710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 24307307 - 24307201
Alignment:
Q  8 cattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||    
T  24307307 cattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttcaacattcttcttgctt 24307208  T
Q  108 ctcttct 114  Q
    |||||||    
T  24307207 ctcttct 24307201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 9e-43
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 23408741 - 23408840
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttct 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  23408741 cccatcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttct 23408840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 23453573 - 23453672
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttct 114  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23453573 cccatggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctacattcttcttgcttctcttct 23453672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 23402151 - 23402052
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttct 114  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  23402151 cccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttct 23402052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 23415910 - 23416009
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttct 114  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  23415910 cccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttct 23416009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 23885904 - 23885805
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttct 114  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  23885904 cccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttct 23885805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 26435881 - 26435782
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttct 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||  ||||||||||||||||||    
T  26435881 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttct 26435782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 26832812 - 26832713
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttct 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||  ||||||||||||||||||    
T  26832812 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttct 26832713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 26434101 - 26434002
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttct 114  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||  ||||||||||||||||||    
T  26434101 cccatggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttct 26434002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 34662242 - 34662341
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttct 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| ||  |||||||| |||||||||    
T  34662242 cccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttct 34662341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 41670477 - 41670378
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctcttct 114  Q
    ||||| || |||||||||||||||||||| || ||||| || || ||||| ||||| |||||||||||||| ||||| ||  |||||||| |||||||||    
T  41670477 cccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttct 41670378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 40795846 - 40795749
Alignment:
Q  15 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctacattcttcttgcttctctt 112  Q
    ||||| || ||||| ||||| |||||||| || ||||| || || ||||| ||||| |||||||||||||| ||||||||  |||||||| |||||||    
T  40795846 cccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctt 40795749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 29684778 - 29684701
Alignment:
Q  14 tcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 91  Q
    |||||| ||||| ||||| | ||||||| | || ||||||||||| ||||| |||||||| || |||||||| |||||    
T  29684778 tcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaaccttgaatatatatatcttgtaggtttc 29684701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 40180468 - 40180547
Alignment:
Q  12 attcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc 91  Q
    |||||||| || |||||||| | ||| || || || ||||| ||||||||||| ||||| ||||| |||||||| |||||    
T  40180468 attcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttc 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University