View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400-Insertion-2 (Length: 633)
Name: NF5400-Insertion-2
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 617
Target Start/End: Original strand, 35102690 - 35103296
Alignment:
| Q |
10 |
aaggtgatcaattattagagtttgatttatacataaatgtatatgtatctctttttgtttcattta-----ttagaaatttaattttcaatttcacttat |
104 |
Q |
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| T |
35102690 |
aaggtgatcaattattagagtttgatttatacaaaaatgtat--gtatctctttttgtttcatttaatttattagaaatttaattttcaatttcacttat |
35102787 |
T |
|
| Q |
105 |
gtatgtgttgtagtttatggtatttgcttgctccgactctcgagtgagtccctctattatcctcaactttcaacctggtgaagctagctttcatggtccg |
204 |
Q |
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| T |
35102788 |
gt----gttttagtttatggtatttgcttgctctgactctagagtgagtccctctattatcctgaactttcaacatggagaagct----ttcatggtccg |
35102879 |
T |
|
| Q |
205 |
aaacattgctaacatggtccctccatttaatcaggtttacttcactatttttctaaacaaatgaattgatatatgatatacacattatt---gaaaagtt |
301 |
Q |
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| T |
35102880 |
aaacattgctaacatggtccctacatttaatcaggtctacttcactgtttttctaaacaaatgaattgatatatgatatataaattattattgaagagtt |
35102979 |
T |
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| Q |
302 |
tttaatcattgaatttctattccacagttaagatacagtag-agttggtgcaacccttgagtatgctattacagctctaaaggtaatgtttcgcttctat |
400 |
Q |
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| T |
35102980 |
tttaataattaaatttctattccacagttaagatatagtgggagttggtgcaacccttgagtatgcaattacagctctaaaggtaatgtttcgcttctat |
35103079 |
T |
|
| Q |
401 |
tcaaaagtgttttaaaatttgttcgtgagtgtgacatattaaggtctctaactccaatgcgactgtgattgaggctgcatcaatatccataattttgcca |
500 |
Q |
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| T |
35103080 |
tcataagtgttttaaaatttgttcgtgaatgtgacatattaaggtatctaaattcaatgtgactgtgattgaggctgcatcaatatccataattttgcca |
35103179 |
T |
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| Q |
501 |
taactttctnnnnnnnnnnnnnnnntcattactttgttttttggataaaaattaattaattttttcaggtggagaacattttggttattggacatagtcg |
600 |
Q |
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| T |
35103180 |
taactttctaaaagaaaagaaaaaatcattactttgttttttggataaaaattaattaatatttttaggtggagaacatcttggttattggacatagtcg |
35103279 |
T |
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| Q |
601 |
cagtaatggaatctcaa |
617 |
Q |
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| | ||||||||||| |
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| T |
35103280 |
ctgcggtggaatctcaa |
35103296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 108 - 485
Target Start/End: Original strand, 35096896 - 35097275
Alignment:
| Q |
108 |
tgtgttgtagtttatggtatttgcttgctccgactctcgagtgagtccctctattatcctcaactttcaacctggtgaagctagctttcatggtccgaaa |
207 |
Q |
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| T |
35096896 |
tgtgttgtagtttatggtatttgcttgttccgactctcgagtgagtccctctgttatcctgaactttcaacctggtgaagct----ttcatggttcgaaa |
35096991 |
T |
|
| Q |
208 |
cattgctaacatggtccctccatttaatcaggtttacttcactatttttctaaacaaatgaattgatatatgatatacacattattgaaaagtttttaat |
307 |
Q |
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| T |
35096992 |
cattgctaacatggtccctccatttaatcaggtctacttcactatttttctaaagaaatgaatttctatatgatatacacattattgaagagtttttaat |
35097091 |
T |
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| Q |
308 |
cattgaatttctattccacagttaagatacagtagagttggtgcaacccttgagtatgctattacagctctaaaggtaa-tgtttcgcttctattcaaaa |
406 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |
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| T |
35097092 |
aattaaatttctattccacagttaagatacagtggagttggtgcaacccttgagtatgctattacagctctaaaggtaagtgatcagcttctattcaaaa |
35097191 |
T |
|
| Q |
407 |
gtgttttaaaatttgttcgtgagtg-----tgacatattaaggtctctaactccaatgcgactgtgattgaggctgcatcaata |
485 |
Q |
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| T |
35097192 |
gtgttttaaaatttgtttgtgattgtgacatgacatgttaaggtttgtaactctaatgtgattgcgattgaggctgaatcaata |
35097275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 110 - 419
Target Start/End: Original strand, 35110138 - 35110443
Alignment:
| Q |
110 |
tgttgtagtttatggtatttgcttgctccgactctcgagtgagtccctctattatcctcaactttcaacctggtgaagctagctttcatggtccgaaaca |
209 |
Q |
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||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| |
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| T |
35110138 |
tgttgtagtttatggtatttgcttgttctgactctagagtgagtccctctattatcctgaactttcaacctggagaagct----ttcatggtccgaaaca |
35110233 |
T |
|
| Q |
210 |
ttgctaacatggtccctccatttaatcaggtttacttcactatttttctaaacaaatgaattgatatatgatatacacattattgaaaagtttttaatca |
309 |
Q |
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| T |
35110234 |
ttgctaacatggtccctccatttaatcaggtctacttcactatttttctaaagaaatgaatttctatatgatatacacattattgaagagtttttaataa |
35110333 |
T |
|
| Q |
310 |
ttgaatttctattccacagttaagatacagtagagttggtgcaacccttgagtatgctattacagctctaaaggtaatgtttcgcttctattcaaaagtg |
409 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| | ||| |
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| T |
35110334 |
ttaaatttctattccacagttaagatacagtggagttggtgcaacccttgagtatgctattacagctctaaaggtaatgtttagcttttgttcatatgtg |
35110433 |
T |
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| Q |
410 |
ttttaaaatt |
419 |
Q |
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|||||||||| |
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| T |
35110434 |
ttttaaaatt |
35110443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 537 - 601
Target Start/End: Original strand, 35097481 - 35097545
Alignment:
| Q |
537 |
ttttttggataaaaattaattaattttttcaggtggagaacattttggttattggacatagtcgc |
601 |
Q |
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| T |
35097481 |
ttttttggataaaaattaattacttttttcaggtggagaacatcttggttattggacatagtcgc |
35097545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 601
Target Start/End: Original strand, 35110572 - 35110629
Alignment:
| Q |
544 |
gataaaaattaattaattttttcaggtggagaacattttggttattggacatagtcgc |
601 |
Q |
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||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35110572 |
gataaaaatcaattacctttttcaggtggagaacatcttggttattggacatagtcgc |
35110629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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