View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400-Insertion-3 (Length: 610)
Name: NF5400-Insertion-3
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 15 - 606
Target Start/End: Complemental strand, 7353864 - 7353274
Alignment:
| Q |
15 |
gatcatctatctgatcgatatcatgcaacccaggtttaatcatacactcttggacacaaatagaaccaggtagtttcaaatgaagaagctcctggatggt |
114 |
Q |
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| T |
7353864 |
gatcatctatctgatcgatatcatgcaacccaggtttaatcatacactcttggacacaaatagaaccaggtagtttcaaacgaagaagctcctggatggt |
7353765 |
T |
|
| Q |
115 |
tcaacaaatggagctcattaacaaatggtttaacatgggtagtattatactacacacaataagtctcattaacaaatggagcttggataataccgcaagc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7353764 |
tcaacaaatggagctcattaacaaatggtttaacatgggcagtattatactacacacaataagtctcattaacaaatggagcttggataataccgcaagc |
7353665 |
T |
|
| Q |
215 |
gtgtgttgttggcttgacttttcaggcatgacagtagtagttgcattgttcaaattggaaccggatgcaccaatagcagcatcattcaaagtttcatttt |
314 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7353664 |
atgtgttgttggcttgacttttcaggcatgacagcagtagttgcattgttcaaattggaaccggatgcaccaatagcagcatcattcaaagtttcatttt |
7353565 |
T |
|
| Q |
315 |
cacccaatacctcatgaaggtttgtgttcacggtatccaaatgttcaacattcttcattgttgattccttttcacagtttggcaatgactcggtgccttt |
414 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |
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| T |
7353564 |
cacccaatacctcatgaaggtttgtgtttacggtatccaaatgttcaacattcttcattgttgattccttttcacagtttggcaaggacccagtgccttt |
7353465 |
T |
|
| Q |
415 |
agatttggctatcacatccaaagtcgtaatagacgcttggattgaactgcagaaattctgcaaaccaaccatttcattgttggtactctaaatgtcaaac |
514 |
Q |
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| T |
7353464 |
agatttggctatcacatccaaagccgcaatagacgcttggattgaactgcagaaattcttcaaaccaaccatttcattgttggtactctaaatgtcaaac |
7353365 |
T |
|
| Q |
515 |
aaaagtgaacactgttagtatatattctaatttgcttattatattgtgactatagactctttgcaccaagctcatagtgggaacaaatctca |
606 |
Q |
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| T |
7353364 |
aaaagtgaacactgttagtatatattctaatttgcttagtatattgtgactatagact-tttgcaccaagctcatattgggaacaaatctca |
7353274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 282 - 523
Target Start/End: Complemental strand, 15493551 - 15493310
Alignment:
| Q |
282 |
caccaatagcagcatcattcaaagtttcattttcacccaatacctcatgaaggtttgtgttcacggtatccaaatgttcaacattcttcattgttgattc |
381 |
Q |
| |
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||||||||| |||| ||||||||||||||||||||| || |||||| || ||||| ||| |||||||||||||||||||||||| || ||| || |
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| T |
15493551 |
caccaatagtagcaccattcaaagtttcattttcacataacacctcagaaatgtttgcattctcggtatccaaatgttcaacattctccaaatttgttta |
15493452 |
T |
|
| Q |
382 |
cttttcacagtttggcaatgactcggtgcctttagatttggctatcacatccaaagtcgtaatagacgcttggattgaactgcagaaattctgcaaacca |
481 |
Q |
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||||||| ||||| | | ||| | |||||||||||||||| | | | |||||||| |||||| | | |||| || ||| ||| ||| ||||||| |
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| T |
15493451 |
cttttcaatgtttgacgacgacccaatgcctttagatttggcaaacccttccaaagtgacaatagatgatgagattaaattgccgaaggtcttcaaacca |
15493352 |
T |
|
| Q |
482 |
accatttcattgttggtactctaaatgtcaaacaaaagtgaa |
523 |
Q |
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| T |
15493351 |
accatttcattgttgctactctaaatgtcaaacaaaggtgaa |
15493310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 31250394 - 31250335
Alignment:
| Q |
144 |
ttaacatgggtagtattatactacacacaataagtctcattaacaaatggagcttggata |
203 |
Q |
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|||||||| | | |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31250394 |
ttaacatgtgcaatattatactacacacaataagtctcattaacaaatggaaattggata |
31250335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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