View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400-Insertion-4 (Length: 591)
Name: NF5400-Insertion-4
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400-Insertion-4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 8 - 591
Target Start/End: Original strand, 32402919 - 32403499
Alignment:
| Q |
8 |
gccataaaggtcattgagggtggaggagatgtctgtgaacaagtactgctacaaaaatgggacaaaatattcttcactggtactattttccaaatggcca |
107 |
Q |
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| T |
32402919 |
gccataaaggtcattgagggtggaggagatgtctgtgaacaagtacttctacaaaaatgggacaaaatattcttcactggtactattttccaaatggcca |
32403018 |
T |
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| Q |
108 |
aattcattcattgaactaaacttgtggaatatgcaaatattactactatatacattttaatttgattggctcaacaatcgttattctttcctttgaattt |
207 |
Q |
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| T |
32403019 |
aattcattcattgaactaaacttgtggaatatgcaaatattactactatatacattttaatttgattggctcaacactcgttattctttcctttgaattt |
32403118 |
T |
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| Q |
208 |
gaatttccttgcagtcagcagcaatctcacgcattcatgcagtaagcatgccggtaacattgaacttatgtgctaactacgtgaatgcgtagaattgctc |
307 |
Q |
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| T |
32403119 |
gaatttccttgcagtgagca---atctcacgcattcatgcagtaagcatgccggtaacattgaacttatgtgctaactgcgtgaatgcgtagaattgctc |
32403215 |
T |
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| Q |
308 |
actgcatgtaaactaaattcatttccttttgcttaatggtttctttgcttataatctcaaactgaattcttgttttagaattatctctacatgatgtatg |
407 |
Q |
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| T |
32403216 |
actgcatgcaaactaaattcatttccttttgcttaatggtttctttgcttataatctcaaactgaattcttgttctagaattatctctacatgatgtatg |
32403315 |
T |
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| Q |
408 |
acattttcaggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctgttactctagagttaggtggaaaatgccctgcta |
507 |
Q |
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| T |
32403316 |
acattttcaggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctgttactctagagctaggtggaaaatgccctgcta |
32403415 |
T |
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| Q |
508 |
tatttgattatccttcagactttaaggtaattcacataacggttcgtgaccgcaaattgtggtcacatgtcaagatttttgttg |
591 |
Q |
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| T |
32403416 |
tatttgattatccttcagactttaaggtaattcacataacggttcgtgaccgcaaattgtggtcacatgtcaagatttttgttg |
32403499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 417 - 519
Target Start/End: Complemental strand, 6664730 - 6664628
Alignment:
| Q |
417 |
ggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctgttactctagagttaggtggaaaatgccctgctatatttgatt |
516 |
Q |
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| T |
6664730 |
ggaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagatatttaactcctgttactctagagctaggtggaaaatgccctgctatatttgatt |
6664631 |
T |
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| Q |
517 |
atc |
519 |
Q |
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| T |
6664630 |
atc |
6664628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 6664786 - 6664729
Alignment:
| Q |
30 |
gaggagatgtctgtgaacaagtactgctacaaaaatgggacaaaatattcttcactgg |
87 |
Q |
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| T |
6664786 |
gaggagatgtctgtgaacaactactgctacaaaagtggggcaaaatattcttcactgg |
6664729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 418 - 519
Target Start/End: Complemental strand, 43304928 - 43304827
Alignment:
| Q |
418 |
gaagtccacgtgtggcaagcatagtcatgtcttctgctgcaagaaatttaactcctgttactctagagttaggtggaaaatgccctgctatatttgatta |
517 |
Q |
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| T |
43304928 |
gaagtccacgtgtggcaagcatagtcatgtcttttgctgcaagatatttaactcctgttactcgagagctaggtggaaaatgccctgctatatttgatta |
43304829 |
T |
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| Q |
518 |
tc |
519 |
Q |
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| T |
43304828 |
tc |
43304827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 43304985 - 43304930
Alignment:
| Q |
30 |
gaggagatgtctgtgaacaagtactgctacaaaaatgggacaaaatattcttcact |
85 |
Q |
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| T |
43304985 |
gaggagatgtctgtgaacaactactgctacaaaagtggggcaaaatattcttcact |
43304930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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