View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400-Insertion-6 (Length: 505)
Name: NF5400-Insertion-6
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 4167375 - 4166877
Alignment:
| Q |
7 |
aaaaacagccacgggtggcacgtttggtgcacacgtgctaatttcctcggccaccaatagtgctagtgtcgcgccaaggctatgtcccgtaacggttatg |
106 |
Q |
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| T |
4167375 |
aaaaacagccacgggtggcacgtttggtgcacacgtgctaatttcctcggccaccaatagtgctagtgtcgcaccaaggctatgtcccgtaacggttatg |
4167276 |
T |
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| Q |
107 |
cttaattcttcgcctttgtaaagttcaataaggcgtcgcacttcttcaacaacggactcggataggctttgcacatgagccccttttgttttgtacaagc |
206 |
Q |
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| T |
4167275 |
cttaattcttcgcctttgtaaagttcaataaggcgtcgcacttcttcaacaacggactcggataggctttgcacatgagccccttttgttttgtacaagc |
4167176 |
T |
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| Q |
207 |
tcatgaacccacactcaactttgggctttgattgggtctgtgtttgagtctgagtctgagcatcctcgggtaaatcgactaattgggccctcatattttc |
306 |
Q |
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| T |
4167175 |
tcatgaacccacactcaactttgggctttgattgggtctgtgtttgagtctgtgtctgagcatcctcgggtaaatcgactaattgggccctcatattttc |
4167076 |
T |
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| Q |
307 |
agcccattctagacaagtggaagttccacgaagagatatcacaatatctcttcgtcccattcttgcaatctctcttttatcgtcgcaaactgcaacatat |
406 |
Q |
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| T |
4167075 |
agcccattctagacaagtggaagttccacgaagagatatcacaatatctcttcgtcccattcttgcaatctctcttttatcgtcgcaaactgcaacatat |
4166976 |
T |
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| Q |
407 |
ccgacccagctagaacgctgggtcatccaaccaagatctggagccacctcatcaacccatttaggtaatccaattgatgatgtggcatacagactcttg |
505 |
Q |
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| T |
4166975 |
ccgacccagctagaacgctgggtcatccaaccaagatctggagccacctcatcaacccatttaggtaatccaattgatgatgtggcatacagactcttg |
4166877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 286 - 495
Target Start/End: Original strand, 41314614 - 41314823
Alignment:
| Q |
286 |
taattgggccctcatattttcagcccattctagacaagtggaagttccacgaagagatatcacaatatctcttcgtcccattcttgcaatctctctttta |
385 |
Q |
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| T |
41314614 |
taattgggctcgcatattctcggcccattcaagacacgtggcggttccacggagagagataacaatatctctccttcctaatcttgaaatctctcttttg |
41314713 |
T |
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| Q |
386 |
tcgtcgcaaactgcaacatatccgacccagctagaacgctgggtcatccaaccaagatctggagccacctcatcaacccatttaggtaatccaattgatg |
485 |
Q |
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| T |
41314714 |
tcgttgcaaacagccacatatccaatccagctggatctctgggtcatccatccgagatccggagccacatcatcaacccatttaggtaaaccaattgatg |
41314813 |
T |
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| Q |
486 |
atgtggcata |
495 |
Q |
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| T |
41314814 |
atgtggcata |
41314823 |
T |
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