View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400-Insertion-7 (Length: 440)
Name: NF5400-Insertion-7
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Original strand, 5662952 - 5663378
Alignment:
| Q |
8 |
tcttccacttcttcctctcgggttctgcttctacatttatatccatttccaaattcgcccaaatacgcccat--ccgtgttcaataaaacgaaagaacac |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||| || ||||| |
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| T |
5662952 |
tcttccacttcttcctctcgggttctgcttctacatctatatccatttccaaatttgcccaaatacgcccatatccgtgttcaataaaacggaaaaacac |
5663051 |
T |
|
| Q |
106 |
ggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccggcttcgaagcttctgt |
205 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
5663052 |
ggttgaatgattattctatacaagtgcatccaggtaattgtattagcaagattgaattcattgtttatggtgtatctcgctccgacttcgaagcttctgt |
5663151 |
T |
|
| Q |
206 |
caccggtaagaccatggtcgcttctcacaagtagttaaag--acattagcttcacgttctcctccatttcctgtca-atttggtactcacgagccagtag |
302 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5663152 |
caccggtaagaccatggtcgcttctcacaagaagttaaagacacattagcttcacattctcctccatttcctgtcagttttggtactcacgagccagtag |
5663251 |
T |
|
| Q |
303 |
ttatgttctgctgccttgggttataacttcttcatcttcctcctgttattatactactgttgttataatagttttcttctatgctgatattgctaacatg |
402 |
Q |
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||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5663252 |
ttatgttctgctgccttggtttataacttcttcatct---ttctgttattatactactgttgttataatagttttcttctgtgctgatattgctaacatg |
5663348 |
T |
|
| Q |
403 |
ttactataaactgcttatgagaatcatgtg |
432 |
Q |
| |
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||||||||| |||||||||||||||||||| |
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| T |
5663349 |
ttactataatctgcttatgagaatcatgtg |
5663378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 52131194 - 52131504
Alignment:
| Q |
8 |
tcttccacttcttcctctcgggttctgcttctacatttatatccatttccaaattcgcccaaatacgcccatccgtgttcaataaaacgaaagaacacgg |
107 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
52131194 |
tcttccacttcttcctctcgggttatgcttctacatctatatccatatccaaattcgcccaaatacgcccatccgtgttcagtaaaacgaa-gaacacgg |
52131292 |
T |
|
| Q |
108 |
ttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccggcttcgaagcttctgtca |
207 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
52131293 |
ttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaatttattattgacggtgtatctcaatccgatttcgaagcttctgtca |
52131392 |
T |
|
| Q |
208 |
ccggtaagaccatggtcgcttctcacaagtagttaaaga-cat-tagcttcacgttctcctccatttcctgtcaatttggtactcacgagccagtagtta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
52131393 |
tcggtaagaccatggtcgcttctcacaagaagtcaaagaacatgtagcgtcacgttatcctccatttcctgtcaatttggtactcacgaga----agtta |
52131488 |
T |
|
| Q |
306 |
tgttctgctgccttgg |
321 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
52131489 |
tgttctgctgccttgg |
52131504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 11649370 - 11649155
Alignment:
| Q |
8 |
tcttccacttcttcctctcgggttctgcttctacatttatatccatttccaaattcgcccaaatacgcccatccgtgttcaataaaacgaaagaacacgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||| | |||||||||| |
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| T |
11649370 |
tcttccacttcttcctctcgggttctgcttctacatctatatccatatccaaat----------acgcccatccgtgttcactaaaaaggaagaacacgg |
11649281 |
T |
|
| Q |
108 |
ttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccggcttcgaagcttctgtca |
207 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11649280 |
ttgaatgattattcaatacaagtgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagcttctgtca |
11649181 |
T |
|
| Q |
208 |
ccggtaagaccatggtcgcttctcac |
233 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
11649180 |
tcggtaagaccatggtcgcttctcac |
11649155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 22007660 - 22007884
Alignment:
| Q |
70 |
atacgcccatccgtgttcaataaaacgaaagaacacggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgt |
169 |
Q |
| |
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|||||||| || ||||||| ||||| | |||||||| ||||||||||||||||||||| ||||||||| ||| ||||||| |||| |||||||||||| |
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| T |
22007660 |
atacgcccctctgtgttcagtaaaaaggaagaacactgttgaatgattattcaatacaggtgcatccagataagtgtattacgaagactgaattcattgt |
22007759 |
T |
|
| Q |
170 |
tgacggtgtatctcgctccggcttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagtagttaaag-acat-tagcttcacg----ttct |
263 |
Q |
| |
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|| |||||||||||||| || |||| || ||||||||| || |||||||||||||||| ||||||| |||||||| |||| |||||||||| |||| |
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| T |
22007760 |
tggcggtgtatctcgcttcgacttcaaaacttctgtcatcgtcaagaccatggtcgcttttcacaagaagttaaagaacatgtagcttcacgttgattct |
22007859 |
T |
|
| Q |
264 |
cctccatttcctgtcaatttggtac |
288 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
22007860 |
cctccatttcctgtcaatttggtac |
22007884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 11649159 - 11649126
Alignment:
| Q |
288 |
ctcacgagccagtagttatgttctgctgccttgg |
321 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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| T |
11649159 |
ctcacgagccagcagttatgttctgctgccttgg |
11649126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 14231210 - 14231304
Alignment:
| Q |
85 |
ttcaataaaacgaaagaacacggttgaatgattattcaatacaattgcatccaggtaattgtattagcaagattgaattcattgttgacggtgtatc |
181 |
Q |
| |
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|||| ||||| | |||||||||||||||||| |||||||||| ||||||||| |||| |||||| |||| | ||| ||||||| ||||||||| |
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| T |
14231210 |
ttcagtaaaaaggaagaacacggttgaatga--attcaatacaggtgcatccagataataatattaggaagactagatttattgttggcggtgtatc |
14231304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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