View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400-Insertion-8 (Length: 421)
Name: NF5400-Insertion-8
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400-Insertion-8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 240 - 421
Target Start/End: Complemental strand, 10267453 - 10267272
Alignment:
| Q |
240 |
taagactctgataatctgactgaataagtatagaagaaaacacaatttacgagtaagtatccttctgcaataatagaataacaatatggaaagagcaaat |
339 |
Q |
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| T |
10267453 |
taagactctgataatctgactgaataagtatagaagaaaacataatttatgagtaagtatccttctgcaataatagaataacaatatggaaagaacaaat |
10267354 |
T |
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| Q |
340 |
agacaaaagtcaaaagtaagtattgatcttgggtgatcaagatgattggccgagcttggacagtgtttcgtcaagatggatg |
421 |
Q |
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| T |
10267353 |
agacaaaagtcaaaagtaagtattgatcttaggtgatcaagatgattggccgagcttggacagtgtttcgtcaagatggatg |
10267272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 10267718 - 10267594
Alignment:
| Q |
8 |
gttaccatgttattaccaaagtagcccttaatgttggggttaatcagttggttttttgcctctacagagatctacttgctctttctatccttgctcctat |
107 |
Q |
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| T |
10267718 |
gttaccacgttattaccaaagtagcccttaatgttggggttaatcagttggttttttgcctctacagagatctacttgctctttctatccttgctcctat |
10267619 |
T |
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| Q |
108 |
tgcttatattcgtgaaaagtatgtt |
132 |
Q |
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| T |
10267618 |
tgcttatattcgtgaaaagtatgtt |
10267594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 25461257 - 25461302
Alignment:
| Q |
268 |
tatagaagaaaacacaatttacgagtaagtatccttctgcaataat |
313 |
Q |
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| T |
25461257 |
tatagaagaaaacagaatttatgagtaagtatccttctgtaataat |
25461302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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