View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400-Insertion-9 (Length: 401)
Name: NF5400-Insertion-9
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 401
Target Start/End: Original strand, 487894 - 488288
Alignment:
| Q |
7 |
atgaaaaacactgatatacaatctccaaacaacttactttgccgatttctgagaaagcacaagtagcaaatgaaaattattatgaccaagcctaccccaa |
106 |
Q |
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| T |
487894 |
atgaaaaacactgatatacaatctccaaacaacttactttgccgatttctgagaaagcacaagtagcaaatgaaaattattatgaccaagcctaccccaa |
487993 |
T |
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| Q |
107 |
ctgcaatgactgtaatcatccatattttgcttgaattatctgcacaaaagatcaatcaaaactagctttgacagaatgtttaagaattgtattgcaactt |
206 |
Q |
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| T |
487994 |
ctgcaatgactgtaatcatccatattttgcttgaattatctgcacaaaagatcaatcaaaactagctttgacagaatgtttaagaattgtattgcaactt |
488093 |
T |
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| Q |
207 |
gagaaatgcttacttttccctcctaggttggtagaagactttgtttgttctttttcaccaagataaaatggatagaattcatatctcagataacagctac |
306 |
Q |
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| T |
488094 |
gagaaatgcttacttttccctcctaggttggtagaagactttgtttgttctttttcaccaagataaaatggatagaattcatatctcagataacagctgc |
488193 |
T |
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| Q |
307 |
gactcataactctcgcaccaatggaggcataacagcaacctggtatatctccaatagcacttagtagacacctactgcaatcattagctgctaga |
401 |
Q |
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| T |
488194 |
gactcataactctcgcaccaatggaggcataacagcaacctggtatatctccaatagcacttagtagacacctactgcaatcattagctgctaga |
488288 |
T |
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