View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_106 (Length: 231)
Name: NF5400_high_106
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_106 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 50369825 - 50369604
Alignment:
| Q |
1 |
tactcctgcgattttgctctctgaactttctcaggtattattattagacacaatagtttgttacaataaccagttacgctagttaattaggttggattat |
100 |
Q |
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| T |
50369825 |
tactcctgcgattttgctctctgaactttctcaggtattattattagacacaatagttagttacaataaccagttacgctagttaattaggttggattat |
50369726 |
T |
|
| Q |
101 |
gaaatgccttaattaggtatttgtagttggttatattaatctaatttggaatttagttgtta-ggctgtttgatgttattgtgatgaggttttgagttta |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
50369725 |
gaaatgccttaattagggatttgtagttggttatattaatctaatttggaatttagttgttagggttgtttgatgttattgtgatgaggttttgagttta |
50369626 |
T |
|
| Q |
200 |
attagggttttgagttgatgat |
221 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
50369625 |
attagggttttgagttgatgat |
50369604 |
T |
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