View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_high_109 (Length: 225)

Name: NF5400_high_109
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_high_109
NF5400_high_109
[»] chr4 (12 HSPs)
chr4 (12-208)||(23868811-23869007)
chr4 (1-205)||(23453364-23453568)
chr4 (6-208)||(24307302-24307504)
chr4 (9-205)||(23885909-23886105)
chr4 (8-205)||(23415708-23415905)
chr4 (10-205)||(23402156-23402351)
chr4 (13-205)||(23408544-23408736)
chr4 (8-205)||(26434106-26434303)
chr4 (8-205)||(26832817-26833014)
chr4 (6-205)||(26435886-26436085)
chr4 (12-205)||(34662044-34662237)
chr4 (65-197)||(23451788-23451920)
[»] chr7 (3 HSPs)
chr7 (8-138)||(47317431-47317561)
chr7 (48-205)||(40180309-40180466)
chr7 (158-194)||(47317395-47317431)
[»] chr1 (6 HSPs)
chr1 (8-138)||(33216594-33216724)
chr1 (16-205)||(41670482-41670671)
chr1 (30-205)||(40795851-40796026)
chr1 (36-205)||(29391548-29391717)
chr1 (6-91)||(45576399-45576484)
chr1 (158-194)||(33216558-33216594)
[»] chr2 (1 HSPs)
chr2 (51-103)||(14715433-14715485)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 23869007 - 23868811
Alignment:
Q  12 atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  23869007 atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaattt 23868908  T
Q  112 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23868907 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattat 23868811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 23453364 - 23453568
Alignment:
Q  1 ttttctctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgc 100  Q
    |||||||||| |||||||||||||| ||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23453364 ttttctctcagatctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgc 23453463  T
Q  101 agtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23453464 agtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactg 23453563  T
Q  201 ttcat 205  Q
    |||||    
T  23453564 ttcat 23453568  T

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Target: chr4; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 24307504 - 24307302
Alignment:
Q  6 tctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtct 105  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24307504 tctcaaatctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtct 24307405  T
Q  106 gaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  24307404 gaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcat 24307305  T
Q  206 tat 208  Q
    |||    
T  24307304 tat 24307302  T

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Target: chr4; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 23886105 - 23885909
Alignment:
Q  9 caaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaa 108  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23886105 caaatctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaa 23886006  T
Q  109 tttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23886005 tttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 23885909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 23415708 - 23415905
Alignment:
Q  8 tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga 107  Q
    |||| ||||||| ||||| |||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415708 tcaagtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga 23415807  T
Q  108 atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415808 atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 23415905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 23402351 - 23402156
Alignment:
Q  10 aaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaat 109  Q
    |||||||||||||||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23402351 aaatctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaat 23402252  T
Q  110 ttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23402251 ttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 23402156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 23408544 - 23408736
Alignment:
Q  13 tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 112  Q
    ||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||    
T  23408544 tctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttc 23408643  T
Q  113 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23408644 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 23408736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 26434303 - 26434106
Alignment:
Q  8 tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga 107  Q
    |||||||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||    
T  26434303 tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga 26434204  T
Q  108 atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  26434203 atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcat 26434106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 26833014 - 26832817
Alignment:
Q  8 tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga 107  Q
    |||||||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||    
T  26833014 tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga 26832915  T
Q  108 atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  26832914 atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcat 26832817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 26436085 - 26435886
Alignment:
Q  6 tctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtct 105  Q
    ||||||||||||||||| || |||||||| ||||| || || || ||||||||| ||||||||||||||||||| || |||||||| ||||| || ||||    
T  26436085 tctcaaatctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtct 26435986  T
Q  106 gaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||||||||    
T  26435985 gaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcat 26435886  T

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Target: chr4; HSP #11
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 34662044 - 34662237
Alignment:
Q  12 atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt 111  Q
    ||||||||||| || ||||| || |||||||| || || ||||| ||||||||||| |||||||| |||||||||||||| || || |||||||||||||    
T  34662044 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt 34662143  T
Q  112 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    |||| ||||| || || ||||||||||| || |  ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  34662144 ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcat 34662237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 197
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
Q  65 cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct 164  Q
    ||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||    
T  23451788 cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct 23451887  T
Q  165 tgagcaagcttctcgaagatatcattgatgaaa 197  Q
    ||||| |||||||| |||||||| |||||||||    
T  23451888 tgagcgagcttctcaaagatatcgttgatgaaa 23451920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 47317561 - 47317431
Alignment:
Q  8 tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga 107  Q
    |||||| ||||||||||| ||||| ||||||||||| || || ||||||||| |||| |||||||||||||||||||||| |||||||||  |||| |||    
T  47317561 tcaaatttaagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttga 47317462  T
Q  108 atttcccttgaagtgattgttggcttcttgt 138  Q
    |||||||||||||||||||||||||||||||    
T  47317461 atttcccttgaagtgattgttggcttcttgt 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 40180309 - 40180466
Alignment:
Q  48 ccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgag 147  Q
    ||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||||||| || | ||    
T  40180309 ccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctag 40180408  T
Q  148 caagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    | |  |  || ||||| ||||| || ||||| |||||||| || ||||||||||||||    
T  40180409 ccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcat 40180466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
Q  158 tgattcttgagcaagcttctcgaagatatcattgatg 194  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47317431 tgattcttgagcaagcttcacgaagatatcattgatg 47317395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 33216724 - 33216594
Alignment:
Q  8 tcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctga 107  Q
    |||||| ||||||| ||| ||||| |||||||| || || || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||    
T  33216724 tcaaatttaagaaccagtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttga 33216625  T
Q  108 atttcccttgaagtgattgttggcttcttgt 138  Q
    |||| ||||||||||||||||||||||||||    
T  33216624 attttccttgaagtgattgttggcttcttgt 33216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 41670671 - 41670482
Alignment:
Q  16 aagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct 115  Q
    |||| |||||||| || || ||||| || ||||| ||||| ||||||||||| || | |||||| || |||||||| |  || |||||||| || ||||     
T  41670671 aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg 41670572  T
Q  116 tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
     ||||||||||| |||||||||||||| |  ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||||||    
T  41670571 agaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcat 41670482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 40796026 - 40795851
Alignment:
Q  30 ttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttg 129  Q
    ||||| || ||||| ||||| || || ||||| |||||||| | ||| || |||||||| || |  || ||||||||||| || |  || ||||| || |    
T  40796026 ttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtag 40795927  T
Q  130 gcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    | ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  40795926 gtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcat 40795851  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 29391717 - 29391548
Alignment:
Q  36 acagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 135  Q
    ||||| || |||||||| ||||||||||| || ||||||||||| |||||||| |  |  || || || ||||| ||||| || || || || || ||||    
T  29391717 acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct 29391618  T
Q  136 tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcat 205  Q
    ||||||||||||| | ||| || | ||| ||||| || ||||| ||||||||||||||||||||||||||    
T  29391617 tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcat 29391548  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 45576484 - 45576399
Alignment:
Q  6 tctcaaatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaag 91  Q
    |||||||||||||| || ||||| || ||||||||||| || || ||||||||| ||||||| ||||||||| | || ||||||||    
T  45576484 tctcaaatctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag 45576399  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
Q  158 tgattcttgagcaagcttctcgaagatatcattgatg 194  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33216594 tgattcttgagcaagcttcacgaagatatcattgatg 33216558  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
Q  51 tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt 103  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  14715485 tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt 14715433  T

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