View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_high_11 (Length: 589)

Name: NF5400_high_11
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_high_11
NF5400_high_11
[»] chr7 (34 HSPs)
chr7 (18-580)||(327406-327975)
chr7 (18-490)||(620621-621100)
chr7 (235-484)||(528434-528683)
chr7 (492-580)||(282829-282917)
chr7 (510-556)||(10691314-10691360)
chr7 (494-552)||(24679100-24679158)
chr7 (489-556)||(7873504-7873571)
chr7 (490-557)||(29933524-29933591)
chr7 (537-580)||(282518-282561)
chr7 (513-556)||(10691641-10691684)
chr7 (493-556)||(43078055-43078118)
chr7 (493-556)||(43092032-43092095)
chr7 (490-551)||(21939331-21939392)
chr7 (510-555)||(42438029-42438074)
chr7 (504-556)||(7873883-7873935)
chr7 (494-556)||(29933190-29933252)
chr7 (510-555)||(26974246-26974291)
chr7 (510-555)||(42436845-42436890)
chr7 (488-556)||(46199047-46199115)
chr7 (512-551)||(9500159-9500198)
chr7 (513-552)||(30283425-30283464)
chr7 (510-560)||(30283714-30283763)
chr7 (514-556)||(34116118-34116160)
chr7 (510-555)||(1449999-1450044)
chr7 (510-555)||(18201370-18201415)
chr7 (514-555)||(30505134-30505175)
chr7 (32-77)||(36498260-36498305)
chr7 (514-555)||(40139549-40139590)
chr7 (514-555)||(40790923-40790964)
chr7 (513-549)||(5490523-5490559)
chr7 (513-549)||(5490924-5490960)
chr7 (504-552)||(9477143-9477191)
chr7 (516-552)||(9477446-9477482)
chr7 (488-552)||(26787922-26787986)
[»] chr4 (36 HSPs)
chr4 (490-580)||(41148161-41148251)
chr4 (489-580)||(53578883-53578974)
chr4 (493-575)||(41148533-41148615)
chr4 (494-556)||(53831152-53831214)
chr4 (513-555)||(1140618-1140660)
chr4 (505-555)||(30064013-30064063)
chr4 (510-555)||(6033865-6033910)
chr4 (510-555)||(31761855-31761900)
chr4 (491-556)||(47742228-47742293)
chr4 (493-552)||(3369846-3369905)
chr4 (489-556)||(13388156-13388222)
chr4 (513-555)||(1139175-1139217)
chr4 (494-560)||(5547613-5547679)
chr4 (513-555)||(14816860-14816902)
chr4 (510-555)||(8143049-8143094)
chr4 (504-556)||(5548005-5548057)
chr4 (492-556)||(30064352-30064416)
chr4 (488-556)||(35830297-35830365)
chr4 (504-556)||(47742596-47742648)
chr4 (516-555)||(31760788-31760827)
chr4 (512-551)||(37831610-37831649)
chr4 (512-555)||(40489229-40489272)
chr4 (488-555)||(44121040-44121107)
chr4 (491-550)||(53578602-53578661)
chr4 (514-560)||(3901695-3901740)
chr4 (510-547)||(6033904-6033941)
chr4 (510-555)||(7472437-7472482)
chr4 (510-555)||(8671999-8672044)
chr4 (510-547)||(15058836-15058873)
chr4 (510-555)||(29860833-29860878)
chr4 (514-555)||(35901805-35901846)
chr4 (510-555)||(44271442-44271487)
chr4 (510-551)||(53060426-53060467)
chr4 (518-555)||(53061801-53061838)
chr4 (492-552)||(21552913-21552973)
chr4 (504-556)||(33641861-33641913)
[»] chr8 (40 HSPs)
chr8 (493-578)||(755902-755987)
chr8 (492-580)||(756085-756173)
chr8 (492-580)||(2802976-2803064)
chr8 (489-580)||(6041084-6041174)
chr8 (489-580)||(6044716-6044806)
chr8 (504-580)||(4461684-4461760)
chr8 (516-580)||(26889619-26889683)
chr8 (510-580)||(6041425-6041495)
chr8 (510-580)||(6045062-6045132)
chr8 (493-580)||(11289275-11289361)
chr8 (510-556)||(45163712-45163758)
chr8 (510-555)||(23936295-23936340)
chr8 (488-556)||(1003797-1003864)
chr8 (488-580)||(2802642-2802734)
chr8 (504-556)||(17512107-17512159)
chr8 (504-556)||(35795583-35795635)
chr8 (487-552)||(45522447-45522512)
chr8 (538-580)||(11288996-11289038)
chr8 (490-580)||(14507930-14508020)
chr8 (510-555)||(45308470-45308515)
chr8 (504-556)||(14170432-14170484)
chr8 (510-546)||(18650947-18650983)
chr8 (504-556)||(23475634-23475686)
chr8 (490-552)||(9498905-9498967)
chr8 (488-542)||(26889287-26889341)
chr8 (510-555)||(5916909-5916954)
chr8 (510-555)||(12278851-12278896)
chr8 (510-555)||(20788050-20788095)
chr8 (504-556)||(1003468-1003520)
chr8 (513-549)||(34602033-34602069)
chr8 (504-556)||(35795227-35795279)
chr8 (517-551)||(12280358-12280392)
chr8 (490-552)||(29196618-29196680)
chr8 (510-555)||(8347567-8347612)
chr8 (510-555)||(31947870-31947915)
chr8 (510-555)||(45309574-45309619)
chr8 (513-549)||(27453145-27453181)
chr8 (513-549)||(27453534-27453570)
chr8 (504-552)||(29340778-29340826)
chr8 (491-551)||(41602868-41602928)
[»] chr5 (19 HSPs)
chr5 (492-580)||(42585984-42586072)
chr5 (493-577)||(42586318-42586402)
chr5 (491-556)||(6464327-6464392)
chr5 (492-556)||(20126436-20126500)
chr5 (491-556)||(36361030-36361095)
chr5 (490-555)||(38162589-38162654)
chr5 (513-556)||(20126670-20126713)
chr5 (510-556)||(36361413-36361459)
chr5 (510-547)||(26366085-26366122)
chr5 (18-58)||(27969877-27969918)
chr5 (510-555)||(38163668-38163713)
chr5 (516-552)||(42169422-42169458)
chr5 (489-548)||(2974894-2974953)
chr5 (493-543)||(128253-128303)
chr5 (491-552)||(20364679-20364740)
chr5 (510-555)||(38973344-38973388)
chr5 (514-555)||(38974930-38974971)
chr5 (515-547)||(7611095-7611127)
chr5 (496-552)||(34969153-34969209)
[»] chr1 (33 HSPs)
chr1 (504-580)||(12074966-12075042)
chr1 (493-578)||(12075244-12075328)
chr1 (494-580)||(2350064-2350150)
chr1 (504-575)||(23953083-23953154)
chr1 (492-559)||(3815045-3815112)
chr1 (495-552)||(37008218-37008275)
chr1 (504-556)||(40876997-40877049)
chr1 (510-555)||(7058376-7058421)
chr1 (504-556)||(46895792-46895844)
chr1 (512-555)||(3814778-3814821)
chr1 (514-555)||(50503721-50503762)
chr1 (510-555)||(51549393-51549438)
chr1 (527-583)||(23952730-23952786)
chr1 (488-556)||(41915774-41915842)
chr1 (488-556)||(46895431-46895499)
chr1 (517-556)||(15788433-15788472)
chr1 (513-555)||(50504803-50504845)
chr1 (505-555)||(50877809-50877859)
chr1 (510-555)||(41611257-41611302)
chr1 (514-555)||(51462200-51462241)
chr1 (488-560)||(366880-366952)
chr1 (492-552)||(367175-367235)
chr1 (513-556)||(6129618-6129661)
chr1 (512-550)||(4059540-4059578)
chr1 (494-556)||(7196676-7196738)
chr1 (510-551)||(4476198-4476239)
chr1 (510-555)||(49696918-49696963)
chr1 (492-556)||(7196963-7197027)
chr1 (511-555)||(11932919-11932963)
chr1 (493-557)||(39642199-39642263)
chr1 (504-556)||(40876710-40876762)
chr1 (516-556)||(43117277-43117317)
chr1 (514-550)||(48471883-48471919)
[»] chr2 (39 HSPs)
chr2 (494-578)||(4856709-4856792)
chr2 (493-578)||(8030125-8030210)
chr2 (492-556)||(14816049-14816113)
chr2 (510-555)||(11363898-11363943)
chr2 (510-555)||(21631834-21631879)
chr2 (510-555)||(28719333-28719378)
chr2 (488-552)||(35500347-35500411)
chr2 (505-556)||(17850486-17850537)
chr2 (494-556)||(14815698-14815760)
chr2 (510-555)||(52292-52337)
chr2 (514-555)||(16143687-16143728)
chr2 (493-556)||(12802456-12802519)
chr2 (514-556)||(8740440-8740482)
chr2 (489-551)||(20650365-20650427)
chr2 (493-547)||(36177351-36177405)
chr2 (510-555)||(10857355-10857400)
chr2 (510-555)||(14983953-14983998)
chr2 (510-555)||(23048306-23048351)
chr2 (510-555)||(23049817-23049862)
chr2 (514-555)||(23685842-23685883)
chr2 (510-555)||(32661687-32661732)
chr2 (510-555)||(36286406-36286451)
chr2 (510-555)||(44078542-44078587)
chr2 (515-555)||(16144923-16144963)
chr2 (491-555)||(28217125-28217189)
chr2 (488-550)||(4587854-4587916)
chr2 (489-547)||(14489471-14489529)
chr2 (489-555)||(21633320-21633386)
chr2 (513-555)||(23280883-23280925)
chr2 (514-556)||(39672673-39672715)
chr2 (517-555)||(43741754-43741792)
chr2 (510-555)||(2755202-2755247)
chr2 (494-551)||(15023095-15023152)
chr2 (494-551)||(16043282-16043339)
chr2 (514-555)||(28733236-28733277)
chr2 (505-542)||(29370727-29370764)
chr2 (486-551)||(34679347-34679412)
chr2 (514-555)||(43890120-43890161)
chr2 (518-555)||(44077094-44077131)
[»] chr6 (22 HSPs)
chr6 (514-570)||(2078186-2078242)
chr6 (510-555)||(28574559-28574604)
chr6 (510-555)||(11623175-11623220)
chr6 (510-555)||(12203908-12203953)
chr6 (529-579)||(6499786-6499836)
chr6 (514-556)||(10582150-10582192)
chr6 (493-555)||(22515972-22516034)
chr6 (510-551)||(2018574-2018615)
chr6 (513-555)||(29874456-29874498)
chr6 (514-555)||(22517486-22517527)
chr6 (23-64)||(33920703-33920744)
chr6 (493-541)||(9070136-9070184)
chr6 (493-541)||(12798726-12798774)
chr6 (512-555)||(4793829-4793872)
chr6 (504-547)||(7504883-7504926)
chr6 (516-547)||(29873066-29873097)
chr6 (514-555)||(2017192-2017233)
chr6 (510-555)||(2173872-2173917)
chr6 (510-555)||(4037054-4037099)
chr6 (494-547)||(30369784-30369837)
chr6 (488-552)||(12799048-12799112)
chr6 (18-74)||(14558466-14558521)
[»] chr3 (36 HSPs)
chr3 (494-556)||(53254963-53255025)
chr3 (492-556)||(53255276-53255340)
chr3 (510-555)||(51224942-51224987)
chr3 (504-556)||(37755189-37755241)
chr3 (510-552)||(2181331-2181373)
chr3 (510-552)||(17258186-17258228)
chr3 (510-555)||(17256584-17256629)
chr3 (510-555)||(32772033-32772078)
chr3 (510-555)||(36315805-36315850)
chr3 (510-555)||(40988614-40988659)
chr3 (488-552)||(3354941-3355005)
chr3 (504-568)||(6128492-6128555)
chr3 (493-556)||(32831480-32831543)
chr3 (488-555)||(54476037-54476104)
chr3 (514-556)||(51453561-51453603)
chr3 (510-555)||(10732400-10732445)
chr3 (514-555)||(32770671-32770712)
chr3 (510-555)||(33944862-33944907)
chr3 (510-551)||(50380171-50380212)
chr3 (510-555)||(50381559-50381604)
chr3 (514-555)||(51226503-51226544)
chr3 (510-555)||(55228059-55228104)
chr3 (511-555)||(5635365-5635409)
chr3 (516-555)||(5636660-5636699)
chr3 (545-580)||(8241230-8241265)
chr3 (488-555)||(46934240-46934307)
chr3 (493-547)||(12759502-12759556)
chr3 (512-550)||(34878547-34878585)
chr3 (489-551)||(36677519-36677581)
chr3 (489-551)||(36687601-36687663)
chr3 (495-544)||(32831161-32831210)
chr3 (517-554)||(33445802-33445839)
chr3 (510-551)||(40989655-40989696)
chr3 (516-549)||(44457445-44457478)
chr3 (522-555)||(49002754-49002787)
chr3 (510-551)||(54477326-54477367)
[»] scaffold0017 (2 HSPs)
scaffold0017 (504-576)||(27911-27983)
scaffold0017 (540-575)||(27563-27598)
[»] scaffold0854 (2 HSPs)
scaffold0854 (510-555)||(3380-3425)
scaffold0854 (510-555)||(1859-1904)
[»] scaffold0468 (1 HSPs)
scaffold0468 (489-556)||(10346-10413)
[»] scaffold0005 (1 HSPs)
scaffold0005 (513-555)||(22809-22851)
[»] scaffold0028 (2 HSPs)
scaffold0028 (510-555)||(32262-32307)
scaffold0028 (510-555)||(31995-32040)
[»] scaffold0097 (1 HSPs)
scaffold0097 (512-555)||(46918-46961)
[»] scaffold0419 (1 HSPs)
scaffold0419 (512-550)||(2979-3017)
[»] scaffold1301 (1 HSPs)
scaffold1301 (510-555)||(1300-1345)
[»] scaffold0354 (1 HSPs)
scaffold0354 (510-555)||(7362-7407)
[»] scaffold0286 (1 HSPs)
scaffold0286 (510-555)||(20124-20169)
[»] scaffold0019 (1 HSPs)
scaffold0019 (510-555)||(122582-122627)
[»] scaffold0016 (1 HSPs)
scaffold0016 (510-555)||(201246-201291)
[»] scaffold0725 (1 HSPs)
scaffold0725 (489-541)||(6698-6750)


Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 18 - 580
Target Start/End: Complemental strand, 327975 - 327406
Alignment:
Q  18 atcattttgaaatattgacaatgtggaggactaggttgatacggttcaacagtttcaggggcaacttgagtatttactgattcattcgcaagcttattat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327975 atcattttgaaatattgacaatgtggaggactaggttgatacggttcaacagtttcaggggcaacttgagtatttactgattcattcgcaagcttattat 327876  T
Q  118 ttcatattccagcaccttattataacttgacatgttgatatttctatccaactttctgtaaattacttcattttgccgtttcattgctaggaatctccaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327875 ttcatattccagcaccttattataacttgacatgttgatatttctatccaactttctgtaaattacttcattttgccgtttcattgctaggaatctccaa 327776  T
Q  218 aagc-------cacacacaggggaggaaagtggtatcgagagaagaggcagtcatgtgaatcaaagatgcggttgatgccagaaatgagagtggatctga 310  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327775 aagcgtgtggtcacacacaggggaggaaagtggtatcgagagaagaggcagtcatgtgaatcaaagatgcggttgatgccagaaatgagagtggatctga 327676  T
Q  311 tattgtgattgtggctcgcaccgatgcgcgccaagccctgtctcttgatgaggcactctataggtcaaggacatttgttgatgctggagctgatgttgtt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  327675 tattgtgattgtggctcgcaccgatgcgcgccaagccctgtctcttgatgaggcactctataggtcaaggacatttgctgatgctggagctgatgttgtt 327576  T
Q  411 tttatagacgcacttgcttccggacaagagatggaagctttttgtcaagtttctcctcttgttccaaaaatggtatgtttttaggcttaacaacagttgt 510  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  327575 tttatagacgcacttgcttccagacaagagatggaagctttttgtcaagtttctcctcttgttccaaaaatggtatgtttttaggcttaatagcagttgt 327476  T
Q  511 ggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  327475 ggccccctatgtttcaagaagttgcgattttggccccctaactaaaatgattcgattttggccccctatg 327406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 620621 - 621100
Alignment:
Q  18 atcattttgaaatattgacaatgtggaggactaggttgatacggttcaacagtttcaggggcaacttgagtatttactgattcattcgcaagcttattat 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  620621 atcattttgaaatattgacaatgtggaggactaggttgatagggttcaacagtttcaggggcaacttgagtatttactcattcattcgcaagcttattat 620720  T
Q  118 ttcatattccagcaccttattataacttgacatgttgatatttctatccaactttctgtaaattacttcattttgccgtttcattgctaggaatctccaa 217  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  620721 ttcatattccagcaccttattataacttgacatgttgacgtttctatccaactttctgtaaattacttcattttgctgtttcattgctaggtatctccaa 620820  T
Q  218 aagc-------cacacacaggggaggaaagtggtatcgagagaagaggcagtcatgtgaatcaaagatgcggttgatgccagaaatgagagtggatctga 310  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  620821 aagcgtgtggtcacacacaggggaggaaagtggtatcgagagaagaggcagtcatgcgaatcaaagctgcggttgatgccagaaatgagagtggatctga 620920  T
Q  311 tattgtgattgtggctcgcaccgatgcgcgccaagccctgtctcttgatgaggcactctataggtcaaggacatttgttgatgctggagctgatgttgtt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  620921 tattgtgattgtggctcgcaccgatgcgcgccaagccctgtctcttgatgaggcactctataggtcaagggcatttgctgatgctggagctgatgttgtt 621020  T
Q  411 tttatagacgcacttgcttccggacaagagatggaagctttttgtcaagtttctcctcttgttccaaaaatggtatgttt 490  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  621021 tttatagacgcacttgcttccagacaagagatggaagctttttgtcaagtttctcctcttgttccaaaaatggtatgttt 621100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 235 - 484
Target Start/End: Original strand, 528434 - 528683
Alignment:
Q  235 ggaaagtggtatcgagagaagaggcagtcatgtgaatcaaagatgcggttgatgccagaaatgagagtggatctgatattgtgattgtggctcgcaccga 334  Q
    |||||||||| |||||||| ||||| || ||| |||| ||||  || |||||||| |||| ||||||||||||||||||||||||||||||||||| |||    
T  528434 ggaaagtggtgtcgagagaggaggcggttatgagaattaaagcggcagttgatgctagaagtgagagtggatctgatattgtgattgtggctcgcagcga 528533  T
Q  335 tgcgcgccaagccctgtctcttgatgaggcactctataggtcaaggacatttgttgatgctggagctgatgttgtttttatagacgcacttgcttccgga 434  Q
    ||| ||||||| | |||||||||| ||||||||    ||| ||| |   ||||  ||||||||||||||||||  ||||||||| ||||||| ||| |      
T  528534 tgcacgccaaggcgtgtctcttgaagaggcactggtgaggacaaagctttttgcagatgctggagctgatgtttgttttatagatgcacttggttctgtt 528633  T
Q  435 caagagatggaagctttttgtcaagtttctcctcttgttccaaaaatggt 484  Q
     |||||||| ||||||||||||||||| |||||| |||||| ||| ||||    
T  528634 gaagagatgaaagctttttgtcaagttgctcctcgtgttcctaaactggt 528683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 492 - 580
Target Start/End: Complemental strand, 282917 - 282829
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  282917 taggcttaatagcagttttggcctcctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 282829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 510 - 556
Target Start/End: Original strand, 10691314 - 10691360
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10691314 tggccccctatgtttcaagaagttgcgattttggccccctaactaaa 10691360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 24679158 - 24679100
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  24679158 ggcttaataacagttttggccccctatgtttcaagaaattgcgattttggccccctaac 24679100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 7873504 - 7873571
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||||   ||||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  7873504 ttttaggcttaattgcagttttgaccccctatgtttcaaggagttgcgattttggccccctaactaaa 7873571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 490 - 557
Target Start/End: Complemental strand, 29933591 - 29933524
Alignment:
Q  490 tttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaa 557  Q
    ||||||||||| ||||||| || ||| |||||||| |||||||||||||||||||| |||||||||||    
T  29933591 tttaggcttaataacagttttgaccctctatgttttaagaagttgcgattttggcctcctaactaaaa 29933524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 537 - 580
Target Start/End: Original strand, 282518 - 282561
Alignment:
Q  537 attttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  282518 attttggccccctaactaaaataattcgattttggccccatatg 282561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 556
Target Start/End: Complemental strand, 10691684 - 10691641
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  10691684 ccccctatgtttcaagaagttacgattttggccccctaactaaa 10691641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 556
Target Start/End: Complemental strand, 43078118 - 43078055
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||| | ||| | ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  43078118 aggcttaatagcagatttggccccctctgtttcaagaagttgcgattttggccccctaattaaa 43078055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 556
Target Start/End: Complemental strand, 43092095 - 43092032
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||| | ||| | |||||||||||||||||||||||| | ||||||||||||||||||||    
T  43092095 aggcttaatagcagatttggccccctatgtttcaagaagttacaattttggccccctaactaaa 43092032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 551
Target Start/End: Complemental strand, 21939392 - 21939331
Alignment:
Q  490 tttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    ||||||||||| | ||||| |||||||||| || ||| ||||||||||||||||||||||||    
T  21939392 tttaggcttaatagcagttttggccccctaagtatcacgaagttgcgattttggccccctaa 21939331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 42438074 - 42438029
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||    
T  42438074 tggccctctatatttcaagaagttgcgattttggccccctaactaa 42438029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 556
Target Start/End: Complemental strand, 7873935 - 7873883
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  7873935 cagttttggccccctatgtttcaagaaattgtgattttggctccctaactaaa 7873883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 556
Target Start/End: Original strand, 29933190 - 29933252
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||| | ||||| || || ||||||||||||||||||||||||||||||| |||| ||||    
T  29933190 ggcttaatagcagttttgacctcctatgtttcaagaagttgcgattttggccctctaattaaa 29933252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 26974246 - 26974291
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||    
T  26974246 tggccccctatatttcaagaagttgcgattttggctccttaactaa 26974291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 42436845 - 42436890
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||||    
T  42436845 tggccccctatgttttaagaagttacgattttggacccctaactaa 42436890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 556
Target Start/End: Original strand, 46199047 - 46199115
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||||| | ||||| || ||| |||| ||| |||||||||||||||||| ||||||| ||||    
T  46199047 tttttaggcttaatagcagttttgcccctctatattttaagaagttgcgattttggtcccctaaataaa 46199115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 551
Target Start/End: Complemental strand, 9500198 - 9500159
Alignment:
Q  512 gccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  9500198 gccccctaagtttcaagaagttgcgattttggtcccctaa 9500159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 552
Target Start/End: Original strand, 30283425 - 30283464
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  30283425 ccccttatgtttcaagaagttgcgattttggccccataac 30283464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 560
Target Start/End: Complemental strand, 30283763 - 30283714
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaaaataa 560  Q
    ||||||||||||| |||| |||||||||||||| |||||||| ||||||||    
T  30283763 tggccccctatgtatcaaaaagttgcgattttgaccccctaa-taaaataa 30283714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 556
Target Start/End: Complemental strand, 34116160 - 34116118
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||| |||||||||||||||||||||  ||||||||||    
T  34116160 cccctatgtatcaagaagttgcgattttggcttcctaactaaa 34116118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 1449999 - 1450044
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||| ||||| |||||| ||||||| |||||||||||||||||||    
T  1449999 tggccacctatctttcaaaaagttgcaattttggccccctaactaa 1450044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 18201370 - 18201415
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||| |||| |||| | |||||||||||||||||||||||||||    
T  18201370 tggcccactatctttctaaaagttgcgattttggccccctaactaa 18201415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 30505175 - 30505134
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||||||||||||||||||  | |||||||||    
T  30505175 cccctatgtttcaagaagttgcgattttgtactcctaactaa 30505134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 36498260 - 36498305
Alignment:
Q  32 ttgacaatgtggaggactaggttgatacggttcaacagtttcaggg 77  Q
    |||| |||||||||||||||||||||||||| ||||| | ||||||    
T  36498260 ttgagaatgtggaggactaggttgatacggtccaacaatgtcaggg 36498305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 40139549 - 40139590
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||| |||| | |||||||||||||||||||||||||||    
T  40139549 cccctatctttctaaaagttgcgattttggccccctaactaa 40139590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 40790964 - 40790923
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||| |||| | |||||||||||||||||||||||||||    
T  40790964 cccctatctttccaaaagttgcgattttggccccctaactaa 40790923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 549
Target Start/End: Original strand, 5490523 - 5490559
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccct 549  Q
    |||| |||||||||| |||||||||||||||||||||    
T  5490523 ccccttatgtttcaaaaagttgcgattttggccccct 5490559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 549
Target Start/End: Complemental strand, 5490960 - 5490924
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccct 549  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  5490960 ccccctatgtttcaaaaagttgcaattttggccccct 5490924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 552
Target Start/End: Original strand, 9477143 - 9477191
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||| ||||||||||||||| || ||||||||||||| ||||| ||||    
T  9477143 cagttttggccccctatgttttaaaaagttgcgattttagccccttaac 9477191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 552
Target Start/End: Complemental strand, 9477482 - 9477446
Alignment:
Q  516 cctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||||||| || ||||||||||||||||||||||||    
T  9477482 cctatgttttaaaaagttgcgattttggccccctaac 9477446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 552
Target Start/End: Complemental strand, 26787986 - 26787922
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||||||||||| |  |||| ||||||||||| |||||| |||||| |||||| ||| ||||||    
T  26787986 tttttaggcttaatagtagttttggccccctatatttcaaaaagttgtgatttttgcctcctaac 26787922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 490 - 580
Target Start/End: Original strand, 41148161 - 41148251
Alignment:
Q  490 tttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||||||||| | ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  41148161 tttaggcttaatagcagttttggccccctatgtttcaagaagttccgattttagccccctaactaaaataattcgattttggccccctatg 41148251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 489 - 580
Target Start/End: Complemental strand, 53578974 - 53578883
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    |||||||||||| | | ||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||    
T  53578974 ttttaggcttaatagccgttttggccccctatgttttaagaagttgcgattttagccccttaactaaaataatttgattttggtcccctatg 53578883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 493 - 575
Target Start/End: Complemental strand, 41148615 - 41148533
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggcccc 575  Q
    |||||||| | ||||| ||||||||||| ||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  41148615 aggcttaatagcagttttggccccctatattttaagaagttgtgattttggtcccctaactaaaataatttgattttggcccc 41148533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 494 - 556
Target Start/End: Original strand, 53831152 - 53831214
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||| | ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  53831152 ggcttaatagcagttttggccccctatgttttaagaagttgcgattttggtcccctaactaaa 53831214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 513 - 555
Target Start/End: Complemental strand, 1140660 - 1140618
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  1140660 ccccctatgtttcaagaagttgcgattttggacccctaactaa 1140618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 505 - 555
Target Start/End: Original strand, 30064013 - 30064063
Alignment:
Q  505 agttgtggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||||||    
T  30064013 agttttggccccctatgttttaagaagttgcgattttggtcccctaactaa 30064063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 6033910 - 6033865
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  6033910 tggccccatatgtttcaagaagttgcgattttggccctctaactaa 6033865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 31761900 - 31761855
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  31761900 tggccccctatatttcaagaagttacgattttggccccctaactaa 31761855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 47742228 - 47742293
Alignment:
Q  491 ttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| |||| | ||||| || || ||||||||||| |||||||||||||||||||||||||||||    
T  47742228 ttaggtttaatagcagttttgtccacctatgtttcaggaagttgcgattttggccccctaactaaa 47742293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 493 - 552
Target Start/End: Original strand, 3369846 - 3369905
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    |||||||| | ||||| | |||||||| || |||||||||||||||||||||||||||||    
T  3369846 aggcttaatatcagtttttgccccctaagtatcaagaagttgcgattttggccccctaac 3369905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 13388156 - 13388222
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||||   ||||| ||||||||||||||||||||||| | |||||||| ||||||||||||    
T  13388156 ttttaggcttaattgcagttttggccccctatgtttcaagaagtagagattttgg-cccctaactaaa 13388222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 555
Target Start/End: Original strand, 1139175 - 1139217
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  1139175 ccccctatggttcaagaagttgcgatttttgccccctaactaa 1139217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 560
Target Start/End: Original strand, 5547613 - 5547679
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataa 560  Q
    ||||||| | ||||| |||||| || | ||||||||||||| |||||||||| ||||||||||||||    
T  5547613 ggcttaatagcagttttggccctctgtatttcaagaagttgagattttggcctcctaactaaaataa 5547679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 555
Target Start/End: Complemental strand, 14816902 - 14816860
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  14816902 ccccctatgtttctagaagttgcgattttggacccctaactaa 14816860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 8143049 - 8143094
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||    
T  8143049 tggcctcctatgttttaagaagttgcgattttggacccctaactaa 8143094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 556
Target Start/End: Complemental strand, 5548057 - 5548005
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| ||||| ||||||||| |||||||||||||||||||| ||||| ||||    
T  5548057 cagttttggcctcctatgttttaagaagttgcgattttggcctcctaattaaa 5548005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 556
Target Start/End: Complemental strand, 30064416 - 30064352
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||| |  |||| |||| ||||| |||| ||||||||||||||||||| |||||||||||    
T  30064416 taggcttaatagtagttttggctccctaagttttaagaagttgcgattttggctccctaactaaa 30064352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 556
Target Start/End: Complemental strand, 35830365 - 35830297
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||||| | ||||| ||||| ||||| ||||||||||||| |||||| | ||||||| ||||    
T  35830365 tttttaggcttaatagcagttttggcctcctatatttcaagaagttgtgatttttgtcccctaaataaa 35830297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 556
Target Start/End: Complemental strand, 47742648 - 47742596
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| || |||||||||||| |||||||| ||||||| ||||||||||||||    
T  47742648 cagttttgaccccctatgttttaagaagttacgattttagccccctaactaaa 47742596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 555
Target Start/End: Original strand, 31760788 - 31760827
Alignment:
Q  516 cctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  31760788 cctatgttttaagaagttgtgattttggccccctaactaa 31760827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 551
Target Start/End: Original strand, 37831610 - 37831649
Alignment:
Q  512 gccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  37831610 gccccctaagttttaagaagttgcgattttggccccctaa 37831649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Original strand, 40489229 - 40489272
Alignment:
Q  512 gccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||| |||| | |||||||||||||||||||||||||||    
T  40489229 gccccctatctttctaaaagttgcgattttggccccctaactaa 40489272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 555
Target Start/End: Complemental strand, 44121107 - 44121040
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||  ||| || ||||||||||| |||  | |||||||||||||| ||||||||||||    
T  44121107 tttttaggcttaattacacttttggccccctatcttttcaaaagttgcgattttgaccccctaactaa 44121040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 550
Target Start/End: Original strand, 53578602 - 53578661
Alignment:
Q  491 ttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggcccccta 550  Q
    |||||||||| ||||||| ||||| | ||||||| ||| ||| |||||||||||||||||    
T  53578602 ttaggcttaataacagttttggcctcttatgttttaagcagtcgcgattttggcccccta 53578661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 560
Target Start/End: Complemental strand, 3901740 - 3901695
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaaaataa 560  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  3901740 cccctatgttttaagaagttgcgattttagccccctaa-taaaataa 3901695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 547
Target Start/End: Complemental strand, 6033941 - 6033904
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggcccc 547  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  6033941 tggccccctatattttaagaagttgcgattttggcccc 6033904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 7472482 - 7472437
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||    
T  7472482 tggccccctatctttctaaaagttgcgattttgaccccctaactaa 7472437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 8672044 - 8671999
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||| |||||||||||||||||||||||| | || ||||||||    
T  8672044 tggccccttatgtttcaagaagttgcgattttagacctctaactaa 8671999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 547
Target Start/End: Original strand, 15058836 - 15058873
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggcccc 547  Q
    |||||||||||||||||| | |||||||||||||||||    
T  15058836 tggccccctatgtttcaaaatgttgcgattttggcccc 15058873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 29860878 - 29860833
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||| || |||| | |||||||||||||||||||||||||||    
T  29860878 tggccccccatctttccaaaagttgcgattttggccccctaactaa 29860833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 35901846 - 35901805
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||| | |||||||||||||||| ||||||||||    
T  35901846 cccctatgtttctaaaagttgcgattttggctccctaactaa 35901805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 44271442 - 44271487
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||||| |||||| |||||||| |||||||||||    
T  44271442 tggccccctatatttcaataagttgtgattttggtcccctaactaa 44271487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 551
Target Start/End: Original strand, 53060426 - 53060467
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    ||||||| ||||||| |||||| |||||||||||||||||||    
T  53060426 tggccccttatgttttaagaaggtgcgattttggccccctaa 53060467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 555
Target Start/End: Complemental strand, 53061838 - 53061801
Alignment:
Q  518 tatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  53061838 tatgttttaagaagttgcgattttgaccccctaactaa 53061801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 552
Target Start/End: Complemental strand, 21552973 - 21552913
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||||||| | ||||| ||||  |||||||||||||||||| |||||||| ||| |||||    
T  21552973 taggcttaatagcagttttggcaacctatgtttcaagaagttacgattttgaccctctaac 21552913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 33641861 - 33641913
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| ||||||| ||||||| ||||| ||||||||||| || ||||||||||    
T  33641861 cagttttggccccttatgttttaagaaattgcgattttgacctcctaactaaa 33641913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 493 - 578
Target Start/End: Original strand, 755902 - 755987
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggcccccta 578  Q
    |||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  755902 aggcttaatagcagttttggccctctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggcccccta 755987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 492 - 580
Target Start/End: Complemental strand, 756173 - 756085
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||||||| | ||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  756173 taggcttaatagcagttttggctccctatgttttaagaagttgcgattttggccctctaactaaaataattcgattttggccccctatg 756085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 492 - 580
Target Start/End: Complemental strand, 2803064 - 2802976
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||||||| | ||||| ||  |||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2803064 taggcttaatagcagttttgatcccctatgtttacagaagttgcaattttggccccctaactaaaataattcgattttggccccctatg 2802976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 489 - 580
Target Start/End: Original strand, 6041084 - 6041174
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||| ||||||| | ||| ||| ||||||||||||||||||||||||||||    
T  6041084 tttttggcttaataacagttttggccccctatgtttcaagaagttacgatttt-gacccataattaaaataattcgattttggccccctatg 6041174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 489 - 580
Target Start/End: Original strand, 6044716 - 6044806
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||| ||||||| | ||| ||| ||||||||||||||||||||||||||||    
T  6044716 tttttggcttaataacagttttggccccctatgtttcaagaagttacgatttt-gacccataattaaaataattcgattttggccccctatg 6044806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 504 - 580
Target Start/End: Original strand, 4461684 - 4461760
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||| ||||||| |||||||||| || |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  4461684 cagttttggccccttatgtttcaaaaatttgcgattttggtcccctaactaaaataattcgattttgaccccctatg 4461760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 516 - 580
Target Start/End: Complemental strand, 26889683 - 26889619
Alignment:
Q  516 cctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  26889683 cctatgttttaagaagttgcgattttgaccccctaactaaaataatttgattttggccccctatg 26889619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 580
Target Start/End: Complemental strand, 6041495 - 6041425
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    |||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  6041495 tggccccctatgtttatagaagttgcgattttgatcccctaactaaaataattcgattttgaccccctatg 6041425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 580
Target Start/End: Complemental strand, 6045132 - 6045062
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    |||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  6045132 tggccccctatgtttatagaagttgcgattttgatcccctaactaaaataattcgattttgaccccctatg 6045062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 493 - 580
Target Start/End: Complemental strand, 11289361 - 11289275
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    |||||||| | ||| | |||||||||||||||||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||    
T  11289361 aggcttaatagcagctttggccccctatgtttcaagaagttgcgattctgg-tccctaacttaaataattcgattttggcccactatg 11289275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 510 - 556
Target Start/End: Complemental strand, 45163758 - 45163712
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  45163758 tggccccctatgtttcaagaagttgcgattttggccccctaactaaa 45163712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 23936295 - 23936340
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23936295 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 23936340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 488 - 556
Target Start/End: Complemental strand, 1003864 - 1003797
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| |||||||||||    
T  1003864 tttttaggcttaataacagttttg-ccccctatgtttcaagaagttgcaattttggctccctaactaaa 1003797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 488 - 580
Target Start/End: Original strand, 2802642 - 2802734
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    |||||||| |||| | ||||| || |||||||||| | |||||||||||||||||| ||| ||||||||||||||| |||||| |||| ||||    
T  2802642 tttttaggtttaatagcagttttgaccccctatgtattaagaagttgcgattttggacccataactaaaataattcaattttgaccccatatg 2802734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 17512107 - 17512159
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  17512107 cagttttggccccctatatttcaagaagttgcgattttggccccctaactaaa 17512159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 504 - 556
Target Start/End: Complemental strand, 35795635 - 35795583
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  35795635 cagttttggccccctatgtttcaagaagttgtgattttggccccctaactaaa 35795583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 487 - 552
Target Start/End: Complemental strand, 45522512 - 45522447
Alignment:
Q  487 gtttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    |||||||||||||| | ||||| || |||||||||||| |||||||||||||||| ||||||||||    
T  45522512 gtttttaggcttaaaagcagttttgaccccctatgttttaagaagttgcgattttagccccctaac 45522447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 538 - 580
Target Start/End: Original strand, 11288996 - 11289038
Alignment:
Q  538 ttttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  11288996 ttttggccccctaactaaaataatttgattttggccccctatg 11289038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 490 - 580
Target Start/End: Complemental strand, 14508020 - 14507930
Alignment:
Q  490 tttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||||||||| | ||||| |||||||||||  ||  ||  ||||||||||| ||| ||||||||||||||||||||||||| ||| ||||    
T  14508020 tttaggcttaatatcagttttggccccctataattacagttgttgcgattttagcctcctaactaaaataattcgattttggtcccttatg 14507930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 45308470 - 45308515
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||||||||||||||||||||||  |||||||||||    
T  45308470 tggccccctatgtttcaagaagttgcgattttgaacccctaactaa 45308515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 14170432 - 14170484
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||| ||||    
T  14170432 cagttttgaccccctatgttttaagaagttgcgattttggccccctaattaaa 14170484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 546
Target Start/End: Original strand, 18650947 - 18650983
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccc 546  Q
    |||||||||||||||||||||||||||||||||||||    
T  18650947 tggccccctatgtttcaagaagttgcgattttggccc 18650983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 23475634 - 23475686
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  23475634 cagttttggccccctatgtttcaagaagttgtgattttgaccccttaactaaa 23475686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 9498905 - 9498967
Alignment:
Q  490 tttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||||||||| ||||||| |||||||||| || ||| ||||||||||||||| |||| ||||    
T  9498905 tttaggcttaataacagttttggccccctaagtatcaggaagttgcgattttgaccccataac 9498967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 26889287 - 26889341
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttg 542  Q
    ||||||||||||| | ||||| |||||||||||||||| ||||||||| ||||||    
T  26889287 tttttaggcttaatagcagttttggccccctatgtttccagaagttgcaattttg 26889341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 5916954 - 5916909
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||| |||||||| |||||||||||||||| |||||||||||||    
T  5916954 tggccctctatgttttaagaagttgcgatttttgccccctaactaa 5916909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 12278851 - 12278896
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||    
T  12278851 tggccccctatgttttaagaagttgcgattttggatccctaactaa 12278896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 20788050 - 20788095
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||||    
T  20788050 tggccccctatgtttcaataagttgcaattttggccctctaactaa 20788095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 1003468 - 1003520
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| ||||| ||||| ||| |||||||||||||||||||||| ||||||||    
T  1003468 cagttttggcctcctatattttaagaagttgcgattttggccccataactaaa 1003520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 549
Target Start/End: Original strand, 34602033 - 34602069
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccct 549  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34602033 ccccctatgtttcaaaaagttgcgattttggccccct 34602069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 35795227 - 35795279
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| |||||||||||||||||| ||||||| |||||| ||||||| |||||    
T  35795227 cagttttggccccctatgtttcaaaaagttgcaattttgaccccctagctaaa 35795279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 551
Target Start/End: Complemental strand, 12280392 - 12280358
Alignment:
Q  517 ctatgtttcaagaagttgcgattttggccccctaa 551  Q
    |||||||| ||||||||||||||||||||||||||    
T  12280392 ctatgttttaagaagttgcgattttggccccctaa 12280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 29196680 - 29196618
Alignment:
Q  490 tttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    |||||| |||| ||||||| ||||||||||| ||| |||||||||||||| ||| || |||||    
T  29196680 tttaggtttaataacagttttggccccctatattttaagaagttgcgattatggtcctctaac 29196618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 8347567 - 8347612
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||| ||||||||| ||||||||| |||||||| |||||||||||    
T  8347567 tggcctcctatgttttaagaagttgtgattttggacccctaactaa 8347612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 31947870 - 31947915
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||  | |||||||||||||||||||||||||||    
T  31947870 tggccccctatcttttcaaaagttgcgattttggccccctaactaa 31947915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 45309619 - 45309574
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||| |||| |||||||||||||| |||||||||| ||||||||    
T  45309619 tggccctctatatttcaagaagttgcaattttggccctctaactaa 45309574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 549
Target Start/End: Original strand, 27453145 - 27453181
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccct 549  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  27453145 ccccctatgtttcaaaaagttgcgaatttggccccct 27453181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 549
Target Start/End: Complemental strand, 27453570 - 27453534
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccct 549  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  27453570 ccccctatgtttcaaaaagttgtgattttggccccct 27453534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 552
Target Start/End: Original strand, 29340778 - 29340826
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||| ||||||||||||||| || || |||||||||||||||| ||||    
T  29340778 cagttttggccccctatgtttaaataatttgcgattttggccccttaac 29340826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 551
Target Start/End: Complemental strand, 41602928 - 41602868
Alignment:
Q  491 ttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    |||||||||| | ||||| | |||||||| ||||||| ||||||||||||| ||| |||||    
T  41602928 ttaggcttaatagcagttttagccccctaagtttcaaaaagttgcgattttagcctcctaa 41602868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 492 - 580
Target Start/End: Original strand, 42585984 - 42586072
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  42585984 taggcttaatagcagttttggccccctatgtttcaagaagttgcgattttgaccccctaactaaaataattcgatttcggccccctatg 42586072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 577
Target Start/End: Complemental strand, 42586402 - 42586318
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccct 577  Q
    |||||||| | ||||| |||||||| ||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42586402 aggcttaatagcagttttggccccccatgtttacagaagttgcgattttggccccctaactaaaataatttgattttggccccct 42586318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 491 - 556
Target Start/End: Complemental strand, 6464392 - 6464327
Alignment:
Q  491 ttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6464392 ttaggcttaatagcagttttggccccctatgtttcaagaagttgcgattttggccccctaactaaa 6464327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 492 - 556
Target Start/End: Original strand, 20126436 - 20126500
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||| |  |||| ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  20126436 taggcttaataggagttttggccccctatgtttcaagaagttgtgattttgaccccctaactaaa 20126500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 36361030 - 36361095
Alignment:
Q  491 ttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||   ||||| ||| |||||||||||||||||||||||||||||  ||||||||||||    
T  36361030 ttaggcttaattgcagttttggtcccctatgtttcaagaagttgcgattttgatcccctaactaaa 36361095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 555
Target Start/End: Original strand, 38162589 - 38162654
Alignment:
Q  490 tttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||   || || ||||||||||||||||||||||||| |||||||| |||||||||||    
T  38162589 tttaggcttaattgcacttttggccccctatgtttcaagaagttgtgattttggacccctaactaa 38162654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 513 - 556
Target Start/End: Complemental strand, 20126713 - 20126670
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||||||| ||||||||||||||||| |||||||||||||    
T  20126713 ccccctatgttttaagaagttgcgattttgaccccctaactaaa 20126670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 556
Target Start/End: Complemental strand, 36361459 - 36361413
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  36361459 tggccccctatattttaagaagttgcgattttggccccttaactaaa 36361413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 547
Target Start/End: Complemental strand, 26366122 - 26366085
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggcccc 547  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26366122 tggccccctatgtttcaagaagttgtgattttggcccc 26366085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 27969918 - 27969877
Alignment:
Q  18 atcattttg-aaatattgacaatgtggaggactaggttgata 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  27969918 atcattttgtaaatattgacaatgtggaggactaggttgata 27969877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 38163713 - 38163668
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  38163713 tggcctcctatattttaagaagttgcgattttggccccctaactaa 38163668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 552
Target Start/End: Complemental strand, 42169458 - 42169422
Alignment:
Q  516 cctatgtttcaagaagttgcgattttggccccctaac 552  Q
    |||||||||||||||||||||||||| ||||||||||    
T  42169458 cctatgtttcaagaagttgcgattttagccccctaac 42169422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 548
Target Start/End: Complemental strand, 2974953 - 2974894
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccc 548  Q
    |||||||||||| | ||||| | ||||||||  ||||| |||||||||||||||||||||    
T  2974953 ttttaggcttaatagcagtttttgccccctaactttcacgaagttgcgattttggccccc 2974894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 543
Target Start/End: Original strand, 128253 - 128303
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttgg 543  Q
    |||||||| | ||||| || ||||||||||||||||||||||| |||||||    
T  128253 aggcttaatagcagttttgaccccctatgtttcaagaagttgcaattttgg 128303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 552
Target Start/End: Original strand, 20364679 - 20364740
Alignment:
Q  491 ttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    |||||||||| | ||||| || ||||||| || ||| ||||||||||||||| |||||||||    
T  20364679 ttaggcttaatagcagttttgtccccctaagtatcaggaagttgcgattttgaccccctaac 20364740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 38973344 - 38973388
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  38973344 tggccccctatgttttaagaaattg-gattttggccccctaactaa 38973388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 38974971 - 38974930
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||||||||||| ||||| |||||||||||    
T  38974971 cccctatgttttaagaagttgcgaatttggacccctaactaa 38974930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 547
Target Start/End: Original strand, 7611095 - 7611127
Alignment:
Q  515 ccctatgtttcaagaagttgcgattttggcccc 547  Q
    |||||||||| ||||||||||||||||||||||    
T  7611095 ccctatgttttaagaagttgcgattttggcccc 7611127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 552
Target Start/End: Complemental strand, 34969209 - 34969153
Alignment:
Q  496 cttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||| || |||| |||||| |||||||| |||||||||||||||||| ||| ||||    
T  34969209 cttaataagagttttggccctctatgttttaagaagttgcgattttggacccataac 34969153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 504 - 580
Target Start/End: Original strand, 12074966 - 12075042
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12074966 cagttttggctccctatgtttcaagaagttgcgattttgaccccctaactaaaataattcgattttggccccctatg 12075042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 493 - 578
Target Start/End: Complemental strand, 12075328 - 12075244
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggcccccta 578  Q
    |||||||| | ||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12075328 aggcttaatagcagttttggccccctatgtttacagaagttgcgattttggccccctaactaaaataattcga-tttggcccccta 12075244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 580
Target Start/End: Complemental strand, 2350150 - 2350064
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccctatg 580  Q
    ||||||| ||||||| ||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  2350150 ggcttaataacagttttggtcctctatgttttaagaagttgcgattttgaccccctaactaaaataattcgattttgactccctatg 2350064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 504 - 575
Target Start/End: Complemental strand, 23953154 - 23953083
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggcccc 575  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||||||||||||    
T  23953154 cagttttggccccctatgtttcaagaagttgcgattttgacccctaaactaaaataatttgattttggcccc 23953083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 492 - 559
Target Start/End: Complemental strand, 3815112 - 3815045
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaata 559  Q
    ||||||||| | ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  3815112 taggcttaatagcagttttgaacccctatgtttcaagaagttgcgattttggccccctaactaaaata 3815045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 495 - 552
Target Start/End: Original strand, 37008218 - 37008275
Alignment:
Q  495 gcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37008218 gcttaatagcagttttggccccctatgtttcaagaagttgcgattttggccccctaac 37008275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 504 - 556
Target Start/End: Complemental strand, 40877049 - 40876997
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  40877049 cagttttggccccctatgttccaagaagttgcgattttggccccctaactaaa 40876997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 7058421 - 7058376
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  7058421 tggccccctatgtttcaagaagttgcgattttggacccctaactaa 7058376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 556
Target Start/End: Complemental strand, 46895844 - 46895792
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  46895844 cagttttggccccctatgtttcaagaagttgcgattttgaccccataactaaa 46895792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 555
Target Start/End: Original strand, 3814778 - 3814821
Alignment:
Q  512 gccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  3814778 gccccctatgtttcaagaagttgtgattttggccccctaactaa 3814821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 50503721 - 50503762
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  50503721 cccctatgttttaagaagttgcgattttggccccctaactaa 50503762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 51549438 - 51549393
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||    
T  51549438 tggccccctaagtttcaagaagttgcgattttggacccctaactaa 51549393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 583
Target Start/End: Original strand, 23952730 - 23952786
Alignment:
Q  527 agaagttgcgattttggccccctaactaaaataattcgattttggccccctatgctt 583  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||| ||| |||||||    
T  23952730 agaagttgcaattttgaccctctaactaaaataattcgattttggtcccttatgctt 23952786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 556
Target Start/End: Complemental strand, 41915842 - 41915774
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||||| | ||||| ||| ||||||| |||||||||||||||||||||  ||||||| ||||    
T  41915842 tttttaggcttaatagcagttttggtcccctatatttcaagaagttgcgattttgatcccctaaataaa 41915774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 556
Target Start/End: Original strand, 46895431 - 46895499
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| ||||||| | ||||| ||||||||||| |||||||||||||||||||||  || |||||||||    
T  46895431 ttttttggcttaatagcagttttggccccctatatttcaagaagttgcgattttgatcctctaactaaa 46895499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 517 - 556
Target Start/End: Original strand, 15788433 - 15788472
Alignment:
Q  517 ctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  15788433 ctatgtttcaagaagttgcgatattggccccctaactaaa 15788472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 555
Target Start/End: Complemental strand, 50504845 - 50504803
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  50504845 ccccctatgttttaagaagttgcgattttggacccctaactaa 50504803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 555
Target Start/End: Complemental strand, 50877859 - 50877809
Alignment:
Q  505 agttgtggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||| ||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  50877859 agttctggccacctatgttttaagaagttgcgatattggccccctaactaa 50877809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 41611257 - 41611302
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||    
T  41611257 tggccccctatttttccaaaagttgcgattttggccccctaactaa 41611302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 51462200 - 51462241
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||||||||||||||||||| || ||||||||    
T  51462200 cccctatgtttcaagaagttgcgattttggacctctaactaa 51462241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 560
Target Start/End: Original strand, 366880 - 366952
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataa 560  Q
    |||| |||||||| | ||||| ||||||||||||||| ||||||||  ||||||  ||||||||| |||||||    
T  366880 ttttaaggcttaatagcagttttggccccctatgttttaagaagttatgattttaaccccctaaccaaaataa 366952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 552
Target Start/End: Complemental strand, 367235 - 367175
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||||||| | ||||| ||  ||||||| |||||||| ||||||||||||||||||||||    
T  367235 taggcttaatagcagttttgatcccctatatttcaagaggttgcgattttggccccctaac 367175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 556
Target Start/End: Complemental strand, 6129661 - 6129618
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||    
T  6129661 ccccctatgttttaagatgttgcgatttttgccccctaactaaa 6129618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 550
Target Start/End: Original strand, 4059540 - 4059578
Alignment:
Q  512 gccccctatgtttcaagaagttgcgattttggcccccta 550  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  4059540 gccccctatgtttcaaaatgttgcgattttggcccccta 4059578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 556
Target Start/End: Original strand, 7196676 - 7196738
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||| | ||||| || ||| |||| ||||||||||||||||||||||||  |||||||||    
T  7196676 ggcttaatagcagttttgaccctctatatttcaagaagttgcgattttggcctgctaactaaa 7196738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 551
Target Start/End: Complemental strand, 4476239 - 4476198
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    |||||| |||| ||| ||||||||||||||||||||||||||    
T  4476239 tggccctctatattttaagaagttgcgattttggccccctaa 4476198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 49696963 - 49696918
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||||| |||||| | ||| |||||||    
T  49696963 tggccccctatgtttcaagaagttgtgattttagacccttaactaa 49696918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 556
Target Start/End: Complemental strand, 7197027 - 7196963
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||| | |||||  | |||| ||||||| ||||||||||||||||| | |||||||||||    
T  7197027 taggcttaatagcagtttcgaccccttatgttttaagaagttgcgattttgactccctaactaaa 7196963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 555
Target Start/End: Complemental strand, 11932963 - 11932919
Alignment:
Q  511 ggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||| |||||||||||||||||||| |||| || |||||||||||    
T  11932963 ggcctcctatgtttcaagaagttgcaatttgggacccctaactaa 11932919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 39642199 - 39642263
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaa 557  Q
    |||||||| | ||||| | ||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  39642199 aggcttaatagcagttttcgccccctaactttcacgaagttgcgattttggccctctaaataaaa 39642263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 40876710 - 40876762
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| || |||||||| ||||||||||||| |||||| ||| ||||||||||    
T  40876710 cagttttgaccccctatatttcaagaagttgtgattttagccacctaactaaa 40876762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 556
Target Start/End: Original strand, 43117277 - 43117317
Alignment:
Q  516 cctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||||||||||||||||||||||| || |||| ||||    
T  43117277 cctatgtttcaagaagttgcgattttggtcctctaaataaa 43117317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Original strand, 48471883 - 48471919
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggcccccta 550  Q
    |||||||||||||| | ||||||||||||||||||||    
T  48471883 cccctatgtttcaaaatgttgcgattttggcccccta 48471919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 494 - 578
Target Start/End: Original strand, 4856709 - 4856792
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggcccccta 578  Q
    ||||||| | ||||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  4856709 ggcttaatagcagttttggccccttatgtttcaagaagttgcgatttt-gacccctaactaaaataattcgattttggcccccta 4856792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 493 - 578
Target Start/End: Original strand, 8030125 - 8030210
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggcccccta 578  Q
    |||||||| | ||||| |||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  8030125 aggcttaatagcagttttggccccctatgtttacagaagttgcaattttggtcccctaactaaaataattcgattatggcccccta 8030210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 492 - 556
Target Start/End: Complemental strand, 14816113 - 14816049
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14816113 taggcttaatagcagttttggccccctatgtttcaagaagttgcgattttggccccctaactaaa 14816049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 11363898 - 11363943
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  11363898 tggccccctatgtttcaagaagttgcgattttggctccctaactaa 11363943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 21631834 - 21631879
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  21631834 tggccccctatgtttcatgaagttgcgattttggccccctaactaa 21631879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 28719333 - 28719378
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  28719333 tggccccctatgttttaagaagttgcgattttggccccctaactaa 28719378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 488 - 552
Target Start/End: Complemental strand, 35500411 - 35500347
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||||||||||| |  |||| |||  ||||||||||||||||||||||||||||||||||||||    
T  35500411 tttttaggcttaatagtagttttggggccctatgtttcaagaagttgcgattttggccccctaac 35500347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 505 - 556
Target Start/End: Complemental strand, 17850537 - 17850486
Alignment:
Q  505 agttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||| ||||||||||||||| |||||||||||||||||||| ||||||||||    
T  17850537 agttttggccccctatgttttaagaagttgcgattttggcctcctaactaaa 17850486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 556
Target Start/End: Original strand, 14815698 - 14815760
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||| | ||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  14815698 ggcttaatagcagttttggccccctatgtttcaagaagttgcggttttggtcccttaactaaa 14815760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 52337 - 52292
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  52337 tggccccctatgttttaagaatttgcgattttggccccctaactaa 52292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 16143687 - 16143728
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  16143687 cccctatatttcaagaagttgcgattttggccccctaactaa 16143728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 493 - 556
Target Start/End: Complemental strand, 12802519 - 12802456
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||| | ||||| |||| ||||||||||||||||||||||||||||| |  |||||||||    
T  12802519 aggcttaatagcagttttggctccctatgtttcaagaagttgcgattttggtcttctaactaaa 12802456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 556
Target Start/End: Complemental strand, 8740482 - 8740440
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||||||||||||||||||||| |||| ||||||||    
T  8740482 cccctatgtttcaagaagttgcgattttgaccccttaactaaa 8740440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 551
Target Start/End: Original strand, 20650365 - 20650427
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    |||||||||| | | ||||| | |||||||| |||||||||||||| ||||||||||||||||    
T  20650365 ttttaggcttcatagcagttttagccccctaagtttcaagaagttgagattttggccccctaa 20650427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 547
Target Start/End: Complemental strand, 36177405 - 36177351
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggcccc 547  Q
    |||||||| ||||||| | ||||| || |||||||||||||||||||||||||||    
T  36177405 aggcttaataacagttttagccccttaagtttcaagaagttgcgattttggcccc 36177351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 10857355 - 10857400
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||    
T  10857355 tggccccctatctttccaaaagttgcgattttggccccctaactaa 10857400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 14983998 - 14983953
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||    
T  14983998 tggccccgtatgttttaagaagttgcgattttggtcccctaactaa 14983953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 23048306 - 23048351
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  23048306 tggccccttatattttaagaagttgcgattttggccccctaactaa 23048351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 23049862 - 23049817
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||    
T  23049862 tggccctctatgtttcaagaagttgcgattttggacctctaactaa 23049817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 23685842 - 23685883
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  23685842 cccctatgtttcaagaagttgcgattttttccccctaactaa 23685883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 32661732 - 32661687
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||    
T  32661732 tggccccctatctttccaaaagttgcgattttggccccctaactaa 32661687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 36286451 - 36286406
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||    
T  36286451 tggccccctatctttccaaaagttgcgattttggccccctaactaa 36286406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 44078587 - 44078542
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||    
T  44078587 tggccccctatgttttaagaagttgcgattttggttccctaactaa 44078542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 16144963 - 16144923
Alignment:
Q  515 ccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  16144963 ccctatgttttaagaagttgcgattttggccctctaactaa 16144923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 28217189 - 28217125
Alignment:
Q  491 ttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||  ||| || |||| |||||| |||| | |||||||||||||||||||||||||||    
T  28217189 ttaggcttaattacacttttggctccctatctttctaaaagttgcgattttggccccctaactaa 28217125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 550
Target Start/End: Original strand, 4587854 - 4587916
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggcccccta 550  Q
    |||||||||| |||| || || | |||||||| ||||||| | ||||||||||||||||||||    
T  4587854 tttttaggctaaacaccacttttcgccccctaagtttcaaaatgttgcgattttggcccccta 4587916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 547
Target Start/End: Complemental strand, 14489529 - 14489471
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggcccc 547  Q
    |||||||||||| | ||||| | ||||||||  ||||| ||||||||||||||||||||    
T  14489529 ttttaggcttaatagcagttttcgccccctaactttcacgaagttgcgattttggcccc 14489471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 555
Target Start/End: Complemental strand, 21633386 - 21633320
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||   || || ||||||||||||||| |||||||||| | ||||| |||||||||||    
T  21633386 ttttaggcttaattgcacttttggccccctatgttttaagaagttgcaactttggacccctaactaa 21633320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 555
Target Start/End: Complemental strand, 23280925 - 23280883
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||| |||| | |||||||||||||||||||||||||||    
T  23280925 ccccctatctttctaaaagttgcgattttggccccctaactaa 23280883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 556
Target Start/End: Complemental strand, 39672715 - 39672673
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||    
T  39672715 cccctatgtttcaagaagttgtgattttggtcccataactaaa 39672673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 555
Target Start/End: Complemental strand, 43741792 - 43741754
Alignment:
Q  517 ctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  43741792 ctatgtttcaagaagttgcgattttgatcccctaactaa 43741754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 2755247 - 2755202
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||  | |||||||||||||||||||||||||||    
T  2755247 tggccccctatcttttcaaaagttgcgattttggccccctaactaa 2755202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 15023152 - 15023095
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    ||||||| | ||||| ||||||||||  ||||||||||||| ||||||| ||||||||    
T  15023152 ggcttaatagcagttttggccccctaactttcaagaagttgtgattttgaccccctaa 15023095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 16043339 - 16043282
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    ||||||||| ||||| | ||||||||  ||||| |||||| |||||||||||||||||    
T  16043339 ggcttaacagcagttttcgccccctaactttcacgaagttacgattttggccccctaa 16043282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 28733277 - 28733236
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| || ||||||||||||||||||| |||||||    
T  28733277 cccctatgttttaaaaagttgcgattttggccccttaactaa 28733236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 542
Target Start/End: Original strand, 29370727 - 29370764
Alignment:
Q  505 agttgtggccccctatgtttcaagaagttgcgattttg 542  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  29370727 agttttggccccctatgttttaagaagttgcgattttg 29370764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 551
Target Start/End: Complemental strand, 34679412 - 34679347
Alignment:
Q  486 tgtttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    ||||||| ||||||| | ||||| | ||||||||  ||||| ||||||| ||||||||||||||||    
T  34679412 tgttttttggcttaatagcagtttttgccccctaactttcacgaagttgtgattttggccccctaa 34679347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 43890120 - 43890161
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||||||||||||||||| ||| |||||||    
T  43890120 cccctatgtttgaagaagttgcgattttggtcccttaactaa 43890161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 555
Target Start/End: Original strand, 44077094 - 44077131
Alignment:
Q  518 tatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  44077094 tatgtttcaagaagttgtgattttggacccctaactaa 44077131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 514 - 570
Target Start/End: Original strand, 2078186 - 2078242
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttg 570  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2078186 cccctatgtttcaagaagttgcgattttgaccccctaactaaaataattcgattttg 2078242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 28574604 - 28574559
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28574604 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 28574559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 11623175 - 11623220
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  11623175 tggccctctatgtttcaagaagttgcgattttggccccctaactaa 11623220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 12203908 - 12203953
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  12203908 tggccccctatgtttcaagaagttgcgattttgaccccctaactaa 12203953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 529 - 579
Target Start/End: Original strand, 6499786 - 6499836
Alignment:
Q  529 aagttgcgattttggccccctaactaaaataattcgattttggccccctat 579  Q
    ||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  6499786 aagttgcgattttggtcccctaactaaaataattcgattttgatcccctat 6499836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 514 - 556
Target Start/End: Complemental strand, 10582192 - 10582150
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  10582192 cccctatatttcaagaagttgcgattttggccccctaactaaa 10582150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 493 - 555
Target Start/End: Original strand, 22515972 - 22516034
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||  ||| || ||| |||||||||||||||||||||||||||||| |||||||||||    
T  22515972 aggcttaattacacttttggtcccctatgtttcaagaagttgcgattttggacccctaactaa 22516034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 551
Target Start/End: Complemental strand, 2018615 - 2018574
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  2018615 tggccccttatgtttcaagaagttgcgattttggccccctaa 2018574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 555
Target Start/End: Complemental strand, 29874498 - 29874456
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  29874498 ccccctatgtttcaagaagttgcgatttttgacccctaactaa 29874456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 22517527 - 22517486
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  22517527 cccctatgtttcaagaagttacgattttgaccccctaactaa 22517486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 33920703 - 33920744
Alignment:
Q  23 tttgaaatattgacaatgtggaggactaggttgatacggttc 64  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  33920703 tttgaaatattgataatgtgaaggactaggttgatacggttc 33920744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 9070184 - 9070136
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgatttt 541  Q
    |||||||| | || || ||||||||||||||||||||||||||||||||    
T  9070184 aggcttaatagcatttttggccccctatgtttcaagaagttgcgatttt 9070136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 541
Target Start/End: Original strand, 12798726 - 12798774
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgatttt 541  Q
    |||||||| | ||||| ||||||||||| ||||||||||||||||||||    
T  12798726 aggcttaatagcagttttggccccctatatttcaagaagttgcgatttt 12798774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Complemental strand, 4793872 - 4793829
Alignment:
Q  512 gccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||| |||||||||||| |||||||||||||| |||||||||||    
T  4793872 gcccactatgtttcaagcagttgcgattttggacccctaactaa 4793829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 547
Target Start/End: Complemental strand, 7504926 - 7504883
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggcccc 547  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||    
T  7504926 cagttttggccccctatatttcaagaagttgcaattttggcccc 7504883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 547
Target Start/End: Original strand, 29873066 - 29873097
Alignment:
Q  516 cctatgtttcaagaagttgcgattttggcccc 547  Q
    ||||||||||||||||||||||||||||||||    
T  29873066 cctatgtttcaagaagttgcgattttggcccc 29873097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 2017192 - 2017233
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||| |||||||||||||| |||||||| |||||||||||    
T  2017192 cccctaagtttcaagaagttgtgattttggacccctaactaa 2017233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 2173917 - 2173872
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||| ||||||||| | |||| |||||    
T  2173917 tggccccctatgtttcaagaagtagcgattttgactcccttactaa 2173872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 4037054 - 4037099
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||  | |||||||||||||||||||||||||||    
T  4037054 tggccccctatcttttcaaaagttgcgattttggccccctaactaa 4037099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 547
Target Start/End: Original strand, 30369784 - 30369837
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggcccc 547  Q
    ||||||| | ||||| ||||||| ||||||| ||||||||||||||||| ||||    
T  30369784 ggcttaatagcagttttggccccttatgttttaagaagttgcgattttgtcccc 30369837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 552
Target Start/End: Complemental strand, 12799112 - 12799048
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    |||||||| |||| | ||||| | |||| |||| |||||||||||||||||||||| | ||||||    
T  12799112 tttttaggtttaatagcagttttagccctctatatttcaagaagttgcgattttggtcacctaac 12799048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 14558466 - 14558521
Alignment:
Q  18 atcattttgaaatattgacaatgtggaggactaggttgatacggttcaacagtttca 74  Q
    |||||||||||||||| | ||| ||||||||||||||||||| | |||||| |||||    
T  14558466 atcattttgaaatatt-ataatctggaggactaggttgatacagctcaacaatttca 14558521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 494 - 556
Target Start/End: Original strand, 53254963 - 53255025
Alignment:
Q  494 ggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  53254963 ggcttaataacagttttggccccctatgtttcaagaagttgcgattttggccctctaactaaa 53255025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 492 - 556
Target Start/End: Complemental strand, 53255340 - 53255276
Alignment:
Q  492 taggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||| | ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  53255340 taggcttaatagcagttttggcctcctatgttttaagaagttgcgattttggccccctaactaaa 53255276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 51224942 - 51224987
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  51224942 tggcctcctatgtttcaagaagttgcgattttggccccctaactaa 51224987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 556
Target Start/End: Complemental strand, 37755241 - 37755189
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  37755241 cagttttggccccctatgtttcatgaagttgcgattttagccccctaactaaa 37755189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 510 - 552
Target Start/End: Original strand, 2181331 - 2181373
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  2181331 tggccccctatgtttcaagaagttgcgattttggacccctaac 2181373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 510 - 552
Target Start/End: Complemental strand, 17258228 - 17258186
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  17258228 tggccccctatgtttcaagaagttgcgattttggacccctaac 17258186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 17256584 - 17256629
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||    
T  17256584 tggccccctatatttcaagaagttgcaattttggccccctaactaa 17256629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 32772078 - 32772033
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||    
T  32772078 tggccccctatgtttcaagaagttgtgattttggtcccctaactaa 32772033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 36315805 - 36315850
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||    
T  36315805 tggcccactatgtttcaagaagttgcgattttggacccctaactaa 36315850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 40988614 - 40988659
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  40988614 tggctccctatgtttcaagaagttgcgattttggtcccctaactaa 40988659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 552
Target Start/End: Complemental strand, 3355005 - 3354941
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaac 552  Q
    ||||||||||||| | ||| | |||||||||| || |||||||||||||||||||| ||||||||    
T  3355005 tttttaggcttaatagcagatttggccccctaagtatcaagaagttgcgattttggtcccctaac 3354941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 568
Target Start/End: Complemental strand, 6128555 - 6128492
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattt 568  Q
    ||||| |||||| |||| ||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  6128555 cagttttggcccactatattttaagaagttgcgattttgacccc-taactaaaataattcgattt 6128492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 493 - 556
Target Start/End: Complemental strand, 32831543 - 32831480
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||||||| || |||| ||||||||||||||| || ||||||| ||||||| ||||||||||||    
T  32831543 aggcttaataatagttttggccccctatgtttaaaaaagttgcaattttggtcccctaactaaa 32831480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 555
Target Start/End: Original strand, 54476037 - 54476104
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||   || || ||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  54476037 tttttaggcttaattgcacttttggccccctatattttaagaagttgcgattttgaccccctaactaa 54476104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 556
Target Start/End: Original strand, 51453561 - 51453603
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  51453561 cccctatgttttaagaagttgcgattttgaccccctaactaaa 51453603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 10732445 - 10732400
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||    
T  10732445 tggccccttatgtttcaagaagttgcgattttcgacccctaactaa 10732400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 32770671 - 32770712
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  32770671 cccctatgtttcaagaagttgcgattttggactcctaactaa 32770712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 33944907 - 33944862
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||    
T  33944907 tggccctctatgtttcaagaagttgcgattttgaacccctaactaa 33944862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 551
Target Start/End: Original strand, 50380171 - 50380212
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  50380171 tggccctctatgttttaagaagttgcgattttggccccctaa 50380212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 50381604 - 50381559
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||| ||||||||||||||||||||||||||||| ||| |||||||    
T  50381604 tggctccctatgtttcaagaagttgcgattttggacccttaactaa 50381559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 51226544 - 51226503
Alignment:
Q  514 cccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||||||||||||||||| |||||||||||    
T  51226544 cccctatgttttaagaagttgcgattttggacccctaactaa 51226503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 55228104 - 55228059
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||    
T  55228104 tggccccctatattttaagaagttgcgattttggacccctaactaa 55228059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 555
Target Start/End: Original strand, 5635365 - 5635409
Alignment:
Q  511 ggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||    
T  5635365 ggccccctatgtttcaagatgttgtcattttggccccctaactaa 5635409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 555
Target Start/End: Complemental strand, 5636699 - 5636660
Alignment:
Q  516 cctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  5636699 cctatgtttcaagaagttgcgattttggacctctaactaa 5636660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 545 - 580
Target Start/End: Complemental strand, 8241265 - 8241230
Alignment:
Q  545 cccctaactaaaataattcgattttggccccctatg 580  Q
    |||||||||||||||||||||||| |||||||||||    
T  8241265 cccctaactaaaataattcgatttcggccccctatg 8241230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 555
Target Start/End: Complemental strand, 46934307 - 46934240
Alignment:
Q  488 tttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||   || || ||||||||||| |||| | ||||||||||| |||||||||||||||    
T  46934307 tttttaggcttaattgcacttttggccccctatctttccaaaagttgcgattatggccccctaactaa 46934240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 547
Target Start/End: Original strand, 12759502 - 12759556
Alignment:
Q  493 aggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggcccc 547  Q
    |||||||| ||||||| | ||||||||  ||||||||| ||||||||||||||||    
T  12759502 aggcttaataacagtttttgccccctaactttcaagaaattgcgattttggcccc 12759556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 550
Target Start/End: Original strand, 34878547 - 34878585
Alignment:
Q  512 gccccctatgtttcaagaagttgcgattttggcccccta 550  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  34878547 gccccctatgtttcaaaatgttgcgattttggcccccta 34878585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 551
Target Start/End: Original strand, 36677519 - 36677581
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    |||||||||||| ||||||| | |||| |||  ||||| ||||||||||||||||| ||||||    
T  36677519 ttttaggcttaataacagttttcgcccgctaactttcacgaagttgcgattttggctccctaa 36677581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 551
Target Start/End: Original strand, 36687601 - 36687663
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    |||||||||||| ||||||| | |||| |||  ||||| ||||||||||||||||| ||||||    
T  36687601 ttttaggcttaataacagttttcgcccgctaactttcacgaagttgcgattttggctccctaa 36687663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 544
Target Start/End: Original strand, 32831161 - 32831210
Alignment:
Q  495 gcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggc 544  Q
    |||||| | ||||| |||||||||||||||||||||||| | ||||||||    
T  32831161 gcttaatagcagttttggccccctatgtttcaagaagttacaattttggc 32831210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 33445802 - 33445839
Alignment:
Q  517 ctatgtttcaagaagttgcgattttggccccctaacta 554  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  33445802 ctatgtttcaagaagttgcgattgtggacccctaacta 33445839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 551
Target Start/End: Complemental strand, 40989696 - 40989655
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    ||||||||||||||||||||||||| || ||||| |||||||    
T  40989696 tggccccctatgtttcaagaagttgtgagtttggacccctaa 40989655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 549
Target Start/End: Complemental strand, 44457478 - 44457445
Alignment:
Q  516 cctatgtttcaagaagttgcgattttggccccct 549  Q
    |||||||||||| |||||||||||||||||||||    
T  44457478 cctatgtttcaaaaagttgcgattttggccccct 44457445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 555
Target Start/End: Complemental strand, 49002787 - 49002754
Alignment:
Q  522 tttcaagaagttgcgattttggccccctaactaa 555  Q
    |||||||||||||||||||||| |||||||||||    
T  49002787 tttcaagaagttgcgattttggacccctaactaa 49002754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 551
Target Start/End: Complemental strand, 54477367 - 54477326
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaa 551  Q
    ||||||||||||||| ||||||||| |||||||||| |||||    
T  54477367 tggccccctatgttttaagaagttgtgattttggcctcctaa 54477326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 504 - 576
Target Start/End: Complemental strand, 27983 - 27911
Alignment:
Q  504 cagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaaataattcgattttggccccc 576  Q
    ||||| || |||| |||||||  ||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  27983 cagttttgaccccatatgtttacagaagttgcgattttggacccctaactaaaataattcgattatggccccc 27911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 575
Target Start/End: Original strand, 27563 - 27598
Alignment:
Q  540 ttggccccctaactaaaataattcgattttggcccc 575  Q
    ||||||| ||||||||||||||||||||||||||||    
T  27563 ttggccctctaactaaaataattcgattttggcccc 27598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 3425 - 3380
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  3425 tggcctcctatgttttaagaagttgcgattttggccccctaactaa 3380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 1859 - 1904
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||||    
T  1859 tggcctcctatgtttcaagaagttgagattttggatccctaactaa 1904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 10346 - 10413
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgattttggccccctaactaaa 556  Q
    |||| ||||||| | ||||| ||||| ||||||||| ||||| |||| ||||||||||||||||||||    
T  10346 tttttggcttaatagcagttttggcctcctatgttttaagaaattgcaattttggccccctaactaaa 10413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 555
Target Start/End: Original strand, 22809 - 22851
Alignment:
Q  513 ccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  22809 ccccctatgtttctagaagttgcgattttggacccctaactaa 22851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 32307 - 32262
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||    
T  32307 tggccccctatctttccaaaagttgcgattttggccccctaactaa 32262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 31995 - 32040
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||    
T  31995 tggccccctatctttccaaaagttgcaattttggccccctaactaa 32040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Original strand, 46918 - 46961
Alignment:
Q  512 gccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||    
T  46918 gccccctatctttcaaaaagttgcgattttagccccctaactaa 46961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 550
Target Start/End: Original strand, 2979 - 3017
Alignment:
Q  512 gccccctatgtttcaagaagttgcgattttggcccccta 550  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  2979 gccccctatgtttcaaaatgttgcgattttggcccccta 3017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1301 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 1345 - 1300
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||| ||| |||| | |||||||||||||||||||||||||||    
T  1345 tggccccttatctttccaaaagttgcgattttggccccctaactaa 1300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 7362 - 7407
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||| | |||||||||||||| ||||||||||||    
T  7362 tggccccctatctttctaaaagttgcgattttgtccccctaactaa 7407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 20124 - 20169
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||||||||||||||| ||||||||| | |||| |||||    
T  20124 tggccccctatgtttcaagaagtagcgattttgactcccttactaa 20169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 122627 - 122582
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| |||| | ||||||||||||||||| |||||||||    
T  122627 tggccccctatctttccaaaagttgcgattttggcctcctaactaa 122582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 201291 - 201246
Alignment:
Q  510 tggccccctatgtttcaagaagttgcgattttggccccctaactaa 555  Q
    ||||||||||| ||  |||||||||||||||| |||||||||||||    
T  201291 tggccccctatattataagaagttgcgattttagccccctaactaa 201246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 541
Target Start/End: Complemental strand, 6750 - 6698
Alignment:
Q  489 ttttaggcttaacaacagttgtggccccctatgtttcaagaagttgcgatttt 541  Q
    |||||||||||| | ||||| | |||||||| ||||||| |||||||||||||    
T  6750 ttttaggcttaatagcagttttagccccctaagtttcaacaagttgcgatttt 6698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University