View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_116 (Length: 218)
Name: NF5400_high_116
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_116 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 15807407 - 15807202
Alignment:
| Q |
1 |
caatagtttgtggagttagcaaagtcttcagtacttcatacaacacagttgcaatctgaacgttcctaaccatttcctccctacagagataatatcagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||| |
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| T |
15807407 |
caatagtttgtggagttagcaaagtcttcagtacttcatacaacacagttgcaatctgaacgttcctaaccatttcctccctaca-aaacagcatcagaa |
15807309 |
T |
|
| Q |
101 |
gataagacaattgtaaaatatcttgattcacacaatgtgcaagagcaagttaaagtaagatcaatcaagccttacggttttttagtaaattcaccatccc |
200 |
Q |
| |
|
||||||| || |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15807308 |
gataagataaatgtaaaatcatatgattcacacaacgtgcaagagcaagtttaagtaagatcaatcaagccttacggttttttcgtaaattcaccatccc |
15807209 |
T |
|
| Q |
201 |
ggattct |
207 |
Q |
| |
|
||||||| |
|
|
| T |
15807208 |
ggattct |
15807202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 45929670 - 45929463
Alignment:
| Q |
1 |
caatagtttgtggagttagcaaagtcttcagtacttcatacaacacagttgcaatctgaacgttcctaaccatttcctccctacagagataatatcagaa |
100 |
Q |
| |
|
||||| |||||||| |||||| |||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||| || | | | ||||| |
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|
| T |
45929670 |
caatattttgtggacttagcatagtcttcagtgcttcaaacaacacagttgcaatctgaacattcttaaccatttcctcccttcaaaagcgacaacagaa |
45929571 |
T |
|
| Q |
101 |
g-ataagacaattgtaaaatatcttgattcacacaatgtgcaagagcaagttaaagtaagatcaatcaagccttacggttttttagtaaattcaccatcc |
199 |
Q |
| |
|
| ||||||||| | |||||| |||| ||||||| || |||||||||| ||| |||||||||||||||||| |||||||||||| |||||||||| |
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| T |
45929570 |
gaataagacaaatataaaatcatgtgatacacacaacatgagagagcaagtttaagcaagatcaatcaagccttatggttttttagtattttcaccatcc |
45929471 |
T |
|
| Q |
200 |
cggattct |
207 |
Q |
| |
|
||||||| |
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|
| T |
45929470 |
tggattct |
45929463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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