View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_123 (Length: 207)
Name: NF5400_high_123
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_123 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 52035808 - 52035974
Alignment:
| Q |
1 |
taatgcgaaattactgaactcactgacgattaatgtctcaaaaggggatttaaacagaagacaccaagctctgatgcaactattgcggtgtccaaggggc |
100 |
Q |
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| T |
52035808 |
taatgcgaaattactgaac--actgacgattaaagcctcaaaaggggatttaaacagaaaacaccaaactctgatgcaactattgcggtgtccaaggggc |
52035905 |
T |
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| Q |
101 |
tctcctacatgtcgaattttatttgttgaggaaggttagtggatgtctactttggtttcaatctttctac |
170 |
Q |
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| T |
52035906 |
tctcctacatgtcgaattttatttgttgaggaaggttagtggatgtctactttggtttcaa-ctttctac |
52035974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 12307674 - 12307625
Alignment:
| Q |
158 |
tcaatctttctacaaaccctaaaactgttaaacaaaggtaagtgtatctc |
207 |
Q |
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| T |
12307674 |
tcaatctttctacaaaccctaaaactgttaaacgactgtaagcgtatctc |
12307625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 19973070 - 19973023
Alignment:
| Q |
160 |
aatctttctacaaaccctaaaactgttaaacaaaggtaagtgtatctc |
207 |
Q |
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| T |
19973070 |
aatctttctacaaaccctaaaactgttaaacaaaggtaagtgtatctc |
19973023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 37125880 - 37125929
Alignment:
| Q |
158 |
tcaatctttctacaaaccctaaaactgttaaacaaaggtaagtgtatctc |
207 |
Q |
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| T |
37125880 |
tcaatctttctacaaaccctaaaactgttaaacaattgtaagtgtatctc |
37125929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 92652 - 92701
Alignment:
| Q |
158 |
tcaatctttctacaaaccctaaaactgttaaacaaaggtaagtgtatctc |
207 |
Q |
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| T |
92652 |
tcaatctttctacaaaccctaaaactgttaaacaactgtaagtgtatctc |
92701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 3960051 - 3960002
Alignment:
| Q |
158 |
tcaatctttctacaaaccctaaaactgttaaacaaaggtaagtgtatctc |
207 |
Q |
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||||||| || ||||||||||||||||||||| || ||||||||||||| |
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| T |
3960051 |
tcaatctctccacaaaccctaaaactgttaaaaaattgtaagtgtatctc |
3960002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 55403685 - 55403734
Alignment:
| Q |
158 |
tcaatctttctacaaaccctaaaactgttaaacaaaggtaagtgtatctc |
207 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
55403685 |
tcaatctttctacaaaccctaaaattgttaaacaactgtaagtgtatctc |
55403734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 258013 - 257960
Alignment:
| Q |
155 |
gtttcaatctttctacaaaccctaaaactgttaaacaaa-ggtaagtgtatctc |
207 |
Q |
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|||||||||| || ||||||||||||||||||||| ||| ||||||||||||| |
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| T |
258013 |
gtttcaatctctccacaaaccctaaaactgttaaaaaaattgtaagtgtatctc |
257960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 43326448 - 43326481
Alignment:
| Q |
158 |
tcaatctttctacaaaccctaaaactgttaaaca |
191 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
43326448 |
tcaatcgttctacaaaccctaaaactgttaaaca |
43326481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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