View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_124 (Length: 205)
Name: NF5400_high_124
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_124 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 11315381 - 11315206
Alignment:
| Q |
17 |
atcctctggcaccgaagggtacagccttagtgtctccgacaaggcagctttaagataaaccaaacggtcaacttcttcaaatcccaacggctcatctgtc |
116 |
Q |
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| T |
11315381 |
atcctctggcaccgaagggtacagccttagtgtctccgacaaggcagctttaagataaaccaaacggtcaacttcttcaaatcccaacggctcatctgtc |
11315282 |
T |
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| Q |
117 |
catttttccatgtcagcgccacgtgtctccatcaagaccatgcaaatctcgcgtaggatcttctcttccacctttg |
192 |
Q |
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| T |
11315281 |
catttttccatgtcagcgccacgtgtctccatcaagaccgtgcaaatctcgcgtaggatcttctcttccacctttg |
11315206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 41065318 - 41065421
Alignment:
| Q |
48 |
gtctccgacaaggcagctttaagataaaccaaacggtcaacttcttcaaatcccaacggctcatctgtccatttttccatgtcagcgccacgtgtctcca |
147 |
Q |
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| T |
41065318 |
gtctcggacaatgcagcttttagataaaccaaacgatcaacttcctcaaaagcaagaggttcatctgtccattttgaaagatcaccgccacgtgtctcca |
41065417 |
T |
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| Q |
148 |
tcaa |
151 |
Q |
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|||| |
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| T |
41065418 |
tcaa |
41065421 |
T |
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