View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_15 (Length: 530)
Name: NF5400_high_15
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 43954081 - 43953596
Alignment:
| Q |
18 |
caaagatagtaataaaacgacatctagtgagaatactgaagtgaagaggaagttgataatctggatgtacataatgaggggattctagaagcagataatg |
117 |
Q |
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| T |
43954081 |
caaagatagtaataaaacgacatctagtgagaatattgaagtgaagaggaagttgataatctggatgtacataatgaggggattctagaagcagataatg |
43953982 |
T |
|
| Q |
118 |
atgcatcggcagaagaaaaggatttgggtatgaatcattttgttggtggagtcgtctccagtgagaatgacactcctgttcaggatagatttattcgcct |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43953981 |
atgcatcggcagaagaaaaggatttgggtaggaatcattttgttggtggagtcgtctccagtgagaatgacactcctgttcaggatagatttattcgcct |
43953882 |
T |
|
| Q |
218 |
tccagctgaaatacaagataccgaaagaaatcattttgttttgcattttcccgggagaaatgtagatggtgatactagnnnnnnntgaagtctacgaggc |
317 |
Q |
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| T |
43953881 |
tccagctgaaatacaagataccgaaagaaatcattttgttttgcattttcccgggagaaatgtagatggtgatactagaaaaaaatgaagtctacgaggc |
43953782 |
T |
|
| Q |
318 |
agctctcgaagcacaaggaatctcacatcttatgtcttctgaagttgtcaaggcatttttggattctaacaaactctctagaggttagatcgagataagg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43953781 |
agctctcgaagcacaaggaatctcacatcttatgtcttctgaagttgtcaaggcatttttggattctaacaaactctctagaggttagatcgagataagg |
43953682 |
T |
|
| Q |
418 |
catttcagcaccattgaaaaatgcttttgtatttaatctgtttttctgttaaactttagaaaataccttatatgatgattttatta |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43953681 |
catttcagcaccattgaaaaatgcttttgtatttaatctgtttttctgttaaactttagaaaataccttatatgatgattttatta |
43953596 |
T |
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