View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_high_19 (Length: 505)
Name: NF5400_high_19
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 410
Target Start/End: Original strand, 39691699 - 39692082
Alignment:
| Q |
21 |
aacgatcacatgatcatgatcaaacgttgaaaagaagattcatacatatttgataaacattctcttcaacattttttgttatttcttgttaatgatttca |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39691699 |
aacgatcacatgatcatgatcaaacgttgaaaagaagattcatacat--ttgataaacattctcttcaacattttttgttatttcttgttaatgatttca |
39691796 |
T |
|
| Q |
121 |
aagaataatagagtacttcttcatccagaagcaatgctagctactgcccaacagaagaggatcaaattccacattccgagttgaagattacaagtcacta |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39691797 |
aagaataatagagtacttcttcatccagaagcaatgcta----ctgcccaacagaagaggatcaaattccacattccgagttgaagattacaagtcacta |
39691892 |
T |
|
| Q |
221 |
acattcattgtgtttcatggatcccaacggcttaagaataatacatacaatattgaacggtaaaacaaaattattatatttttcactaaaatgaaacccn |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39691893 |
acattcattgtgtttcatggatcccaacggcttaagaataatacatacaatattgaacggtaaaacaaaattattatatttttcactaaaatgaaaccct |
39691992 |
T |
|
| Q |
321 |
nnnnnnagggacactagaatgaacccgnnnnnnnnnnnnggagtaactaaaatgaaacttattagtatgtgaatgagagagtataaatca |
410 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39691993 |
ttttttagggacactaaaatgaacccgttttttgtttttggagtaactaaaatgaaacttattagtatgtgaatgagagagtataaatca |
39692082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 416 - 492
Target Start/End: Original strand, 39692659 - 39692735
Alignment:
| Q |
416 |
cttacagtgtattttggaccaataatatataagtggcccatggtgaaggtcctacttggcatttcatctggttgttc |
492 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39692659 |
cttacactgtattttggaccaataatatataagtggcccatggtgaaggtcctacttggcatttcatctggttgttc |
39692735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University