View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_high_20 (Length: 501)
Name: NF5400_high_20
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Complemental strand, 53562552 - 53562092
Alignment:
| Q |
19 |
cacagaaagcataagagctgctgcaaacagaaaaaccagcagcaccacaacagaactgcacaacctcaatgaacacagccagacaccacgcagcagcagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562552 |
cacagaaagcataagagctgctgcaaacagaaaaaccagcagcaccacaacagaactgcacagcctcaatgaacacagccagacaccacgcagcagcagc |
53562453 |
T |
|
| Q |
119 |
tctcccaaacaaaacaacctcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactcca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562452 |
tctcccaaacaaaacaacctcaccgcatcaaacagtccttgggattccacttccactcgtagaacaaaaacgccggcaactttaatcttcccaaactcca |
53562353 |
T |
|
| Q |
219 |
cctccaagacaaaaccttgacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaata |
318 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562352 |
cctccaagacaaaaccttgactg----caacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaata |
53562257 |
T |
|
| Q |
319 |
acagcatgccaaataattccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataa |
418 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562256 |
acagcatgccaaataattctaacacctttacgggtcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataa |
53562157 |
T |
|
| Q |
419 |
aattaaagtccaaccattccatgatcttacaccaaaccaccttcaccccttcacaatgaagaaat |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562156 |
aattaaagtccaaccattccatgatcttacaccaaaccaccttcaccccttcacaatgaagaaat |
53562092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 138 - 440
Target Start/End: Original strand, 38185268 - 38185570
Alignment:
| Q |
138 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
237 |
Q |
| |
|
|||||||| ||| || ||||| |||||||| |||||||||| |||||| | |||||||| |||| ||| || |||| ||||||||| | ||| ||||| |
|
|
| T |
38185268 |
tcaccgcaacaagcattccttcggattccaattccactcgtaaaacaaacatgccggcaagtttattctaccaaaacaccacctccaggccaacacctta |
38185367 |
T |
|
| Q |
238 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc |
337 |
Q |
| |
|
| |||||||| || ||||| || | || |||||||| ||| || | || ||||| ||||||||||| |||||||| | ||||||||||||| | |
|
|
| T |
38185368 |
atagattccagcaatgcctcacaatccaacactgcattattaaaagttatatcattcctagctttccatatgctccaaatggcggcatgccaaataagcc |
38185467 |
T |
|
| Q |
338 |
caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc |
437 |
Q |
| |
|
|| || |||| ||||| ||||| |||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||| || |||| ||| || |
|
|
| T |
38185468 |
tcactcccttacaaatctttttattataaaccgctcaattccaacattcccacgtgataaacagattcggtggaattataaaattgaattccagccactc |
38185567 |
T |
|
| Q |
438 |
cat |
440 |
Q |
| |
|
||| |
|
|
| T |
38185568 |
cat |
38185570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 138 - 454
Target Start/End: Original strand, 34821223 - 34821540
Alignment:
| Q |
138 |
tcaccgcatcaaacag-tccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaacctt |
236 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||| ||||| |||||| | | ||||| | |||| || |||| ||||||||| |||||||||| |
|
|
| T |
34821223 |
tcaccgcatcaaacaaatcctttggattccagctccattcgtaaaacaaacaagacggcacatccaatcgacctaaacaccacctccaccacaaaacctt |
34821322 |
T |
|
| Q |
237 |
gacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataatt |
336 |
Q |
| |
|
| ||||||||||| |||||| || | ||||||||| || ||||| | || ||||||||||||||||| |||||||| | || |||||||||| |
|
|
| T |
34821323 |
tattgattccaacagtgcctcaaaatctaaaacagcattgttaaaaataatatcattcctcgctttccatatgctccaaatcgcggcgtgccaaataagc |
34821422 |
T |
|
| Q |
337 |
ccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccatt |
436 |
Q |
| |
|
| || || ||||| ||||| ||||| ||| || ||||||||||| | ||||| ||||| | |||||| || ||||||| ||||| ||| ||||| | |
|
|
| T |
34821423 |
ctcactcccttacgaatctttttattgtgaaccgcaccattccaacaattccacatgataaacaaattcggagggattataatattaatgtctaaccact |
34821522 |
T |
|
| Q |
437 |
ccatgatcttacaccaaa |
454 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
34821523 |
ccatgagcttactccaaa |
34821540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 138 - 452
Target Start/End: Complemental strand, 4903993 - 4903679
Alignment:
| Q |
138 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
237 |
Q |
| |
|
|||||||| |||||| ||||| ||||||| ||||||| || ||||||||||| | | || || || |||||| ||| ||||||||||| ||||| |
|
|
| T |
4903993 |
tcaccgcaacaaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaattcaacctacccaaaaaccatctccaagacaacacctta |
4903894 |
T |
|
| Q |
238 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc |
337 |
Q |
| |
|
|||||||||||||| ||||| || || | ||| |||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| | || |
|
|
| T |
4903893 |
acagattccaacagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatc |
4903794 |
T |
|
| Q |
338 |
caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc |
437 |
Q |
| |
|
| |||| | || | ||| || || |||| | ||||||||||||| ||||| |||||| ||||| || ||||||| ||||||||| |||||||| || |
|
|
| T |
4903793 |
taccacccctgcgcagctttttgttcaaaaactcaccattccaacattgccacataataaacagattaggaggaattaaaaaattaaattccaaccactc |
4903694 |
T |
|
| Q |
438 |
catgatcttacacca |
452 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
4903693 |
cataagcttacacca |
4903679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 440
Target Start/End: Complemental strand, 1557447 - 1557167
Alignment:
| Q |
160 |
ggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttgacagattccaacagatcctcaa |
259 |
Q |
| |
|
|||||||| |||| ||||| |||||| | || ||||| | ||||| ||||||| ||||||||| ||||| ||||| | |||||||| ||| | |||| |
|
|
| T |
1557447 |
ggattccaattccattcgtaaaacaaacaagctggcaagctcaatctacccaaacaccacctccacgacaataccttaattgattccaagagagcttcaa |
1557348 |
T |
|
| Q |
260 |
cctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattccaacacctttacggatcttatt |
359 |
Q |
| |
|
|| | | ||||||||||| | |||| ||||| |||||||| || ||||||| ||||||||||||| | ||||| || || ||||| || |
|
|
| T |
1557347 |
ggtctaaagtcgcattattgaacacaatgtcattccttgctttccaaatgttccaaatggtggcatgccaaataagcctcacacccttccgaatcttttt |
1557248 |
T |
|
| Q |
360 |
atttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccat |
440 |
Q |
| |
|
||| | |||||||||| ||||||||||||||| |||||| ||||| || || |||| |||||||||||||| ||| ||||| |
|
|
| T |
1557247 |
attgacaacagctccaatccaacattcccacataataaacagatttggggggattaaaaaattaaagtccagccagtccat |
1557167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 452
Target Start/End: Original strand, 22153564 - 22153878
Alignment:
| Q |
138 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
237 |
Q |
| |
|
|||||||| |||||| |||| |||||||| ||||||| || |||||| |||| || | || || || |||||| |||||||||||||| ||||| |
|
|
| T |
22153564 |
tcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacctta |
22153663 |
T |
|
| Q |
238 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc |
337 |
Q |
| |
|
| |||||||||||| | ||| || || | ||| ||| ||||||||| |||| |||||||||||||| ||||||||||| | ||||||||||| | || |
|
|
| T |
22153664 |
aaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaattgcggcatgccaaattaatc |
22153763 |
T |
|
| Q |
338 |
caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc |
437 |
Q |
| |
|
| |||| || | ||| || || |||| | |||||||||||||||| || |||||| ||||| | || |||| ||||||||| |||||||| || |
|
|
| T |
22153764 |
taccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaattaaattccaaccactc |
22153863 |
T |
|
| Q |
438 |
catgatcttacacca |
452 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
22153864 |
cataagcttacacca |
22153878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 452
Target Start/End: Original strand, 22209479 - 22209793
Alignment:
| Q |
138 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
237 |
Q |
| |
|
|||||||| |||||| |||| |||||||| ||||||| || |||||| |||| || | || || || |||||| |||||||||||||| ||||| |
|
|
| T |
22209479 |
tcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacctta |
22209578 |
T |
|
| Q |
238 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc |
337 |
Q |
| |
|
| |||||||||||| | ||| || || | ||| ||| ||||||||| |||| |||||||||||||| ||||||||||| | ||||||||||| | || |
|
|
| T |
22209579 |
aaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaattgcggcatgccaaattaatc |
22209678 |
T |
|
| Q |
338 |
caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc |
437 |
Q |
| |
|
| |||| || | ||| || || |||| | |||||||||||||||| || |||||| ||||| | || |||| ||||||||| |||||||| || |
|
|
| T |
22209679 |
taccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaattaaattccaaccactc |
22209778 |
T |
|
| Q |
438 |
catgatcttacacca |
452 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
22209779 |
cataagcttacacca |
22209793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University