View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_high_22 (Length: 490)
Name: NF5400_high_22
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 48658161 - 48657688
Alignment:
| Q |
1 |
ttttttcgtgacaggtagggactctccagtaagggctgactgcatgaatcaaaaccaagtcatcatatgaactccgtcctgattcttgatcagttatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48658161 |
ttttttcgtgacaggtagggactctccagtaagggctgactgcatgaatcaaaaccaagtcatcatatgaactccgtcctgattcttgatcagttatata |
48658062 |
T |
|
| Q |
101 |
cagtttatgtcatgaaaaaatatatagtgaaaacattaatgagaagaaacttgtaacacaatttttcttcatttccgtctaacaaatgaagacttgcctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48658061 |
cagtttatgtcatgaaaaaatatatagtgaaaacattaatgagaagaaacttgtaacacaatttttcttcatttccgtctaacaaatgaagacttgcctg |
48657962 |
T |
|
| Q |
201 |
gtcaattttgagagggtctccttcaagcaagcgagcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48657961 |
gtcaattttgagagggtctccttcaagcaagcgagcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgca |
48657862 |
T |
|
| Q |
301 |
tcatcttctttccactgaccatctcttagaacctgaatgattagatttacttattaatggtatatgcaaggaaggagccatagtcaagttcaggaagaag |
400 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48657861 |
tcatcttctttccactgaccatttcttctaacctgaatgattagatttacttattaatggtatatgcaaggaaggagccataatcaagttcaggaagaag |
48657762 |
T |
|
| Q |
401 |
gtaattcatttattccccaaaaactcttcggaggaaggtcacctttgttcgaggagctaagcgagccattagtg |
474 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48657761 |
gtaattcatttattccccaaaaactcttaagaggaaggtcacctttgttcgaggagctaagcgagccattagtg |
48657688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 50274338 - 50274227
Alignment:
| Q |
223 |
tcaagcaagcgagcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatcatcttctttccactgaccat |
322 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| || |||||||| ||||| || || || ||||| || ||||| ||||| |||| ||||| |
|
|
| T |
50274338 |
tcaagcagacgagcatcagcaggaatgatatctcctaatttaatgctgatgatatcacctgggaccaaaattgcagcatcttcttcagaccacctaccat |
50274239 |
T |
|
| Q |
323 |
ctcttagaacct |
334 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
50274238 |
ctctgagaacct |
50274227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 1460509 - 1460442
Alignment:
| Q |
235 |
gcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatc |
302 |
Q |
| |
|
||||||||||| ||||| ||||||| ||| ||||||||||| || || ||||||||||| || ||||| |
|
|
| T |
1460509 |
gcatcagctgggatgatgtctcctaacttaatgctgattatgtctcctggtactaaaattgcagcatc |
1460442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 1498827 - 1498894
Alignment:
| Q |
235 |
gcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatc |
302 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||||||| || || ||||||||||| || ||||| |
|
|
| T |
1498827 |
gcatcagctggaacaatatctcctaacttgatgctgattatgtctcctggtactaaaattgcagcatc |
1498894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University