View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_25 (Length: 470)
Name: NF5400_high_25
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 27 - 363
Target Start/End: Complemental strand, 2768526 - 2768201
Alignment:
| Q |
27 |
ctgttgggatcatgtgtatatcatcctagtattgtgttttttcctctcttgttttttccttggggtacagtaactttaaatggtgccaaggaaagttaag |
126 |
Q |
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| T |
2768526 |
ctgttgggatcttgtgtatatcatcctagtattgtgttttctc-tctcttgttttttccttggg-tacagtaacttcgaatggtgccaaggaaaattaac |
2768429 |
T |
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| Q |
127 |
cttcaaaaagtcaaactaaaggaatgccatcacttttgttatcaacctatggtaatatgatgaaatgaaacatgattagttttatcaacttggtactata |
226 |
Q |
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| T |
2768428 |
cttcaaaa-gtcaaagtaaa---------ttacagttgttatcaacccatcgtaatatgatgaaatgaaaggtgattagttttatcaacttggtactata |
2768339 |
T |
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| Q |
227 |
tgcagacgatgttttttcatagaaaaaaggtttattattctgtattttgtcaactgaatgtgatcaagtatgaatggttgttttattcaatgattttatt |
326 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2768338 |
tgcagacgatgttttttcaaagaaaaaaggtttattattctgtattttgtcaaccgaatgtgatcaagtatgaatgcttgttttattcaatgattttatc |
2768239 |
T |
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| Q |
327 |
tatcctaccccatttgaaattcaacag-cttagcatat |
363 |
Q |
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| T |
2768238 |
tctcctaccccatttgaaattcaacagacttagcatat |
2768201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 2755656 - 2755525
Alignment:
| Q |
64 |
tttttcctctcttgttttttccttggggtacagtaactttaaatggtgccaaggaaagttaagcttcaaaaagtcaaactaaaggaatgccatcactttt |
163 |
Q |
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| T |
2755656 |
tttttcctctcttgttttttccttggggtacagtaactttaaatggtgccaaggaaagttaagcttcaaaaagtcaaactaaaggaatgccatcactttt |
2755557 |
T |
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| Q |
164 |
gttatcaacctatggtaatatgatgaaatgaa |
195 |
Q |
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| T |
2755556 |
gttatcaacctatggtaatatgatgaaatgaa |
2755525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 190 - 329
Target Start/End: Complemental strand, 2805232 - 2805093
Alignment:
| Q |
190 |
aatgaaacatgattagtttt-atcaacttggtactatatgcagacgatgttttttcatagaaaaaaggtttattattctgtattttgtcaactgaatgtg |
288 |
Q |
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|||| |||||||||| |||| |||||||||||| || |||||||| |||||| | || |||||||||||||||||||||||| ||| |||||||||| |
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| T |
2805232 |
aatggaacatgattaatttttatcaacttggtattaaatgcagaccatgtttct-caaagaaaaaaggtttattattctgtaattttaacactgaatgtg |
2805134 |
T |
|
| Q |
289 |
atcaagtatgaatggttgttttattcaatgattttatttat |
329 |
Q |
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| T |
2805133 |
atcaagtatgaatgattgttttattcaatgcttttatttat |
2805093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 144 - 353
Target Start/End: Complemental strand, 2806647 - 2806442
Alignment:
| Q |
144 |
aaaggaatgccatcacttttgttatcaacctatggtaatatgatgaaatgaaacatgattagttttatcaacttggtactatatgcagacgatgtttttt |
243 |
Q |
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| T |
2806647 |
aaaggaatgccgttacttttgttatcagcatatggtaacgtgatgagcggaa-catgattagttttgtcaacttggtattatatgcagaccatgttttct |
2806549 |
T |
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| Q |
244 |
catagaaaaaaggtttattattctgtattttgtcaactgaatgtgatcaagtatgaatggttgttttattcaatgattttatttatcctaccccatttga |
343 |
Q |
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| T |
2806548 |
ccaagattttt--tttattagtttgtaattttaccactgaatgtggtcaagtatgaattgttgttttattcaatgcttttatttatgctacccca-ttga |
2806452 |
T |
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| Q |
344 |
aattcaacag |
353 |
Q |
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||| |||||| |
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| T |
2806451 |
aatacaacag |
2806442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 2755522 - 2755463
Alignment:
| Q |
257 |
tttattattctgtattttgtcaactgaatgtgatcaagtatgaatggttgttttattcaa |
316 |
Q |
| |
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| T |
2755522 |
tttattattctgtattttgtcaacggaatgtgatcaagtatgaattcttgttttattcaa |
2755463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 2748180 - 2748122
Alignment:
| Q |
295 |
tatgaatggttgttttattcaatgattttatttatcctaccccatttgaaattcaacag |
353 |
Q |
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| T |
2748180 |
tatgaatggttgtttaattgaatgattttatttatgctaccccgtttgaaattcaacag |
2748122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 461
Target Start/End: Complemental strand, 2755413 - 2755328
Alignment:
| Q |
378 |
tgatctactataatttttcaaaatcaccgcaaatta--atgtaattctgtcatatccaccatgatatagagttatctgatgatgtc |
461 |
Q |
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| T |
2755413 |
tgatccactataatttttcaaaatcacggcaaattataatttggttctgtaatatccaccatgatatagagttatttgataatgtc |
2755328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 5412355 - 5412237
Alignment:
| Q |
21 |
attatactgttgggatcatgtgtatatcatcctagtattgtgtt---ttttcctctcttgttttttc---cttggggtacagtaactttaaatggtgcca |
114 |
Q |
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| T |
5412355 |
attatgctgtttggatcatgtgtatattattctagtatagtattgtgttttcc-cactttttttttctttctttgggtacagtaactttgaatggtgcta |
5412257 |
T |
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| Q |
115 |
aggaaagttaagcttcaaaa |
134 |
Q |
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| T |
5412256 |
aggaaatttaagcttcaaaa |
5412237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 2748383 - 2748324
Alignment:
| Q |
82 |
ttccttggggtacagtaactttaaatggtgccaaggaaagttaagcttcaaaaagtcaaa |
141 |
Q |
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|||| ||| ||||||||||||| |||||| |||||| || |||| ||||||||||||||| |
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| T |
2748383 |
ttccctggagtacagtaactttgaatggttccaaggcaaattaaccttcaaaaagtcaaa |
2748324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 455
Target Start/End: Complemental strand, 2768119 - 2768060
Alignment:
| Q |
396 |
caaaatcaccgcaaattaatgtaattctgtcatatccaccatgatatagagttatctgat |
455 |
Q |
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| T |
2768119 |
caaaatcacaacagatcaatgtgattctgtcatatccaccatgacatagagttatttgat |
2768060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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