View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_high_27 (Length: 439)

Name: NF5400_high_27
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_high_27
NF5400_high_27
[»] chr6 (34 HSPs)
chr6 (18-275)||(26651075-26651337)
chr6 (18-275)||(26757043-26757305)
chr6 (46-275)||(26966097-26966332)
chr6 (18-186)||(27422500-27422673)
chr6 (52-275)||(26631459-26631688)
chr6 (52-275)||(26737434-26737663)
chr6 (53-228)||(27714070-27714251)
chr6 (53-228)||(27702303-27702484)
chr6 (137-249)||(31289405-31289518)
chr6 (54-228)||(26890066-26890246)
chr6 (69-126)||(26640690-26640747)
chr6 (69-126)||(26746656-26746713)
chr6 (296-353)||(27588931-27588988)
chr6 (53-215)||(26628012-26628179)
chr6 (53-215)||(26733989-26734156)
chr6 (69-206)||(26828382-26828524)
chr6 (296-349)||(26807119-26807172)
chr6 (297-350)||(26963781-26963834)
chr6 (18-111)||(26964318-26964411)
chr6 (101-209)||(27652226-27652339)
chr6 (296-350)||(26639789-26639843)
chr6 (296-350)||(26745755-26745809)
chr6 (125-219)||(26853696-26853790)
chr6 (133-219)||(27586682-27586768)
chr6 (53-115)||(27652343-27652405)
chr6 (296-340)||(26629049-26629093)
chr6 (296-340)||(26735025-26735069)
chr6 (296-338)||(25078370-25078412)
chr6 (298-348)||(27419419-27419469)
chr6 (296-346)||(27506973-27507023)
chr6 (296-341)||(26650541-26650586)
chr6 (296-341)||(26756509-26756554)
chr6 (397-433)||(26639871-26639907)
chr6 (397-433)||(26745837-26745873)
[»] scaffold0003 (2 HSPs)
scaffold0003 (18-186)||(64690-64863)
scaffold0003 (298-348)||(67894-67944)
[»] chr8 (1 HSPs)
chr8 (53-228)||(29269963-29270144)
[»] scaffold0349 (1 HSPs)
scaffold0349 (53-228)||(17693-17874)
[»] chr4 (1 HSPs)
chr4 (71-234)||(5083105-5083274)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 7e-87; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 26651075 - 26651337
Alignment:
Q  18 gaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaacca 117  Q
    ||||||||||| |||  |||||||||||||||| ||||| |||| | ||| |||||||| | ||| ||||||||||| ||||||||||||||||||||||    
T  26651075 gaaataaacataaggtagttatgtttcaaattcaggcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaacca 26651174  T
Q  118 tctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgcta 212  Q
    ||||||||     | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  26651175 tctgtagtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgcta 26651274  T
Q  213 tgctttgagctcagttatactggtttcagaattttgagaatttcaatctcagtacacaaattg 275  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  26651275 tgctttgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaaattg 26651337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 26757043 - 26757305
Alignment:
Q  18 gaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaacca 117  Q
    ||||||||||| |||  |||||||||||||||| ||||| |||| | ||| |||||||| | ||| ||||||||||| ||||||||||||||||||||||    
T  26757043 gaaataaacataaggtagttatgtttcaaattcaggcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaacca 26757142  T
Q  118 tctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgcta 212  Q
    ||||||||     | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  26757143 tctgtagtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgcta 26757242  T
Q  213 tgctttgagctcagttatactggtttcagaattttgagaatttcaatctcagtacacaaattg 275  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  26757243 tgctttgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaaattg 26757305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 46 - 275
Target Start/End: Original strand, 26966097 - 26966332
Alignment:
Q  46 aattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgt 140  Q
    ||||| |||||||||| |  || ||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||     |||||| |||| |||    
T  26966097 aattcaggcaacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacaccatctgtagtcatctggctatttgcactgt 26966196  T
Q  141 catgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgc-tttgagctcagttatactggtttc 239  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||| ||||| |||| || ||||||||  | ||| | ||||||| |||||||| |    
T  26966197 catgcgacatgtctagagattgcttgcaccacagaatccgttggttgttcgaaagggcagcgaataatgctacacttttcatctcagttttactggttgc 26966296  T
Q  240 agaattttgagaatttcaatctcagtacacaaattg 275  Q
    ||| |||  ||||||||||||| |||||| ||||||    
T  26966297 agagtttgaagaatttcaatcttagtacaaaaattg 26966332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 27422673 - 27422500
Alignment:
Q  18 gaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaacca 117  Q
    ||||||||||| | ||  |||||||| ||| || |||||||||| | |||  ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27422673 gaaataaacataaagaaattatgtttgaaactcaggcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaacca 27422574  T
Q  118 tctgtag-----tggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggtt 186  Q
    |||||||     ||||||| ||||||||||||||||||||||||||||| |||||| || |||||| |||||||    
T  27422573 tctgtagtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgttggtt 27422500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 275
Target Start/End: Original strand, 26631459 - 26631688
Alignment:
Q  52 ggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcg 146  Q
    |||||||||| | ||| |||||| ||||||||||||| ||||    |||||||| ||||||| |||||||||||     ||| |  ||||||||| | |     
T  26631459 ggcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-ca 26631557  T
Q  147 acatgtctagagatttctcgcaccacagaatctgttgg-ttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactggtttcagaat 244  Q
    |||||||||||| || |||||| ||||||||| |||   |||||  |||| ||||||||||||||||||||| | |||||||||||||||||| |||| |    
T  26631558 acatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagt 26631657  T
Q  245 tttgagaatttcaatctcagtacacaaattg 275  Q
    ||||||||||||||| | |||||||||||||    
T  26631658 tttgagaatttcaatattagtacacaaattg 26631688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 275
Target Start/End: Original strand, 26737434 - 26737663
Alignment:
Q  52 ggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcg 146  Q
    |||||||||| | ||| |||||| ||||||||||||| ||||    |||||||| ||||||| |||||||||||     ||| |  ||||||||| | |     
T  26737434 ggcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-ca 26737532  T
Q  147 acatgtctagagatttctcgcaccacagaatctgttgg-ttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactggtttcagaat 244  Q
    |||||||||||| || |||||| ||||||||| |||   |||||  |||| ||||||||||||||||||||| | |||||||||||||||||| |||| |    
T  26737533 acatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagt 26737632  T
Q  245 tttgagaatttcaatctcagtacacaaattg 275  Q
    ||||||||||||||| | |||||||||||||    
T  26737633 tttgagaatttcaatattagtacacaaattg 26737663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 27714251 - 27714070
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| |||| ||||||||||  |||||||||||||||||||||  |||||     ||||||| |||||||||||||||    
T  27714251 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 27714152  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 228  Q
    || |||||||| || ||  || | ||||||| |||||||||| ||||| |||| |||||||| ||||||||| |||||||||    
T  27714151 caagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaatgatatgctttgcagctcagtt 27714070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 27702484 - 27702303
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| |||| |||||| |||  ||||||||||||||||||| |  ||||||     |||||| |||||||||||||||    
T  27702484 gcaacttttctctaaccaaaactaagtattttcttgttttttgactgtacattgtcaggaaacgacatgtagtcatctggctatttgcattgtcatgcga 27702385  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 228  Q
    || |||||||| || ||  || ||||||||| |||||||||| |||||  |||||||||||| ||||||||| |||||||||    
T  27702384 caagtctagaggttgcttacagcacagaatccgttggttgttcgaaaggacagtgagtaatgatatgctttgcagctcagtt 27702303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 31289405 - 31289518
Alignment:
Q  137 ttgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactgg 235  Q
    |||||||||||||||||||| | || |||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||| || ||| |||||||||    
T  31289405 ttgtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactgg 31289504  T
Q  236 tttcagaattttga 249  Q
    || |||| ||||||    
T  31289505 ttacagagttttga 31289518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 26890066 - 26890246
Alignment:
Q  54 caacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgac 148  Q
    |||||||| | ||| ||||||||| |||||| || || |||  ||||||||||||||||||| |||||||||     |||||| |  | ||||||| ||     
T  26890066 caacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggag 26890165  T
Q  149 atgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 228  Q
    |||||||||| ||  ||||||||||||||| || |||||||  |||| ||||||||||| | ||||||||| |||||||||    
T  26890166 atgtctagaggttgttcgcaccacagaatccgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagtt 26890246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 26640690 - 26640747
Alignment:
Q  69 caaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagtg 126  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  26640690 caaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtg 26640747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 26746656 - 26746713
Alignment:
Q  69 caaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagtg 126  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  26746656 caaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtg 26746713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 27588988 - 27588931
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgattattatcccaaag 353  Q
    |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||    
T  27588988 tttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaag 27588931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 215
Target Start/End: Original strand, 26628012 - 26628179
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| ||||  |||||||||  |||||||||||||||||||||  | |||     ||||| | ||||||||||||| |    
T  26628012 gcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaa 26628111  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgc 215  Q
     |||||||||| || || |||| ||| |||| ||||| |||| ||| | | ||||||||||| |||||    
T  26628112 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaatgggaagtgagtaatgatatgc 26628179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 215
Target Start/End: Original strand, 26733989 - 26734156
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| ||||  |||||||||  |||||||||||||||||||||  | |||     ||||| | ||||||||||||| |    
T  26733989 gcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagtcatctggctctctgcattgtcatgcaa 26734088  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgc 215  Q
     |||||||||| || || |||| ||| |||| ||||| |||| ||| | | ||||||||||| |||||    
T  26734089 gatgtctagaggttgcttgcacaacaaaatccgttggctgttcgaatgggaagtgagtaatgatatgc 26734156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 26828382 - 26828524
Alignment:
Q  69 caaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagtg-----gctatgtgcattgtcatgcgacatgtctagagatttc 163  Q
    ||||||||||||||| |||||| |||  ||||||||||||||||  ||||||||||||     |||||  |||||||||||||  |||||||| | || |    
T  26828382 caaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgc 26828481  T
Q  164 tcgcaccacagaatctgttggttgtttgaaagtgcagtgagta 206  Q
    ||| |||||| |||| ||| |||| | ||||| ||| ||||||    
T  26828482 tcgtaccacaaaatccgtttgttgctcgaaagggcaatgagta 26828524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 26807119 - 26807172
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgattattatccc 349  Q
    |||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  26807119 tttagtcataatctttgtgaaagatcttttgaaaaagaaattggttattatccc 26807172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 26963781 - 26963834
Alignment:
Q  297 ttaatcataatatttttgaaagatcttttgaaaaagaaattgattattatccca 350  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||  |||||||    
T  26963781 ttaatcataatctttatgaaagatcttttgaaaaagaaattgattgatatccca 26963834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 26964318 - 26964411
Alignment:
Q  18 gaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcagg 111  Q
    ||||||||||| |||  |||||||||||||||| ||||| || | | ||| ||||||||   |||||||| |||||| ||||||||||||||||    
T  26964318 gaaataaacataaggtagttatgtttcaaattcaggcaagttatctctaaccaaaactacaaatttactttttctttgtctgtacattgtcagg 26964411  T

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Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 27652339 - 27652226
Alignment:
Q  101 acattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaag 195  Q
    |||||||||||||||||||| | ||     |||||| |||||||||||| || ||||||||| ||| ||||||||||| ||||  |||||||||  ||||    
T  27652339 acattgtcaggaaaccatctatggtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatccattggttgttccaaag 27652240  T
Q  196 tgcagtgagtaatg 209  Q
     ||||||| |||||    
T  27652239 ggcagtgactaatg 27652226  T

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Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 26639789 - 26639843
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgattattatccca 350  Q
    |||||||||||| ||| ||| || |||||| ||||||||||||||||||||||||    
T  26639789 tttaatcataatctttgtgagaggtcttttaaaaaagaaattgattattatccca 26639843  T

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Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 26745755 - 26745809
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgattattatccca 350  Q
    |||||||||||| ||| ||| || |||||| ||||||||||||||||||||||||    
T  26745755 tttaatcataatctttgtgagaggtcttttaaaaaagaaattgattattatccca 26745809  T

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Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 26853696 - 26853790
Alignment:
Q  125 tggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg 219  Q
    ||||||| ||||||||||| | | || ||||| | || | | ||||||| |||||||||| |||| ||||| ||||||||||||| |||||||||    
T  26853696 tggctatttgcattgtcattcaagatatctaggggttgcgcacaccacaaaatctgttggctgttcgaaagggcagtgagtaatgatatgctttg 26853790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 27586768 - 27586682
Alignment:
Q  133 tgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg 219  Q
    ||||||||||| ||| ||||||| || |  |||  |||||||||||||| | ||||||||||  ||||||||||||| |||||||||    
T  27586768 tgcattgtcatacgagatgtctataggtggctcaaaccacagaatctgtggcttgtttgaaatggcagtgagtaatgatatgctttg 27586682  T

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Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 27652405 - 27652343
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaac 115  Q
    ||||||||| | ||| ||||||||||||||||||||||| ||  || ||||||||||||||||    
T  27652405 gcaacttttctctaaccaaaactaagcatttacttgttcattgactttacattgtcaggaaac 27652343  T

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Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 26629049 - 26629093
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgat 340  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||||    
T  26629049 tttaatcataatctttatgaaagatcttctgaaaaagaaattgat 26629093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 26735025 - 26735069
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgat 340  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||||    
T  26735025 tttaatcataatctttatgaaagatcttctgaaaaagaaattgat 26735069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 25078370 - 25078412
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattg 338  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||    
T  25078370 tttaatcttaatctttgtgaaagatcttttgaaaaagaaattg 25078412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 27419469 - 27419419
Alignment:
Q  298 taatcataatatttttgaaagatcttttgaaaaagaaattgattattatcc 348  Q
    ||||||||||||||| |||| ||||||| |||||||| ||||| |||||||    
T  27419469 taatcataatattttcgaaacatctttttaaaaagaagttgatcattatcc 27419419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 27507023 - 27506973
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgattattat 346  Q
    |||||||||||| ||| |||| ||||||||||| |||||||||||| ||||    
T  27507023 tttaatcataatctttatgaaggatcttttgaataagaaattgattgttat 27506973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 26650541 - 26650586
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgatt 341  Q
    |||||||||||| ||| |||||||||||||||| |||| |||||||    
T  26650541 tttaatcataatctttatgaaagatcttttgaagaagagattgatt 26650586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 26756509 - 26756554
Alignment:
Q  296 tttaatcataatatttttgaaagatcttttgaaaaagaaattgatt 341  Q
    |||||||||||| ||| |||||||||||||||| |||| |||||||    
T  26756509 tttaatcataatctttatgaaagatcttttgaagaagagattgatt 26756554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 26639871 - 26639907
Alignment:
Q  397 cttgtcatttcttagggactatgaataccgttaatgt 433  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  26639871 cttgtcatttcttagggaatatgaatacagttaatgt 26639907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 26745837 - 26745873
Alignment:
Q  397 cttgtcatttcttagggactatgaataccgttaatgt 433  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  26745837 cttgtcatttcttagggaatatgaatacagttaatgt 26745873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 64690 - 64863
Alignment:
Q  18 gaaataaacatgaggatgttatgtttcaaattcgggcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaacca 117  Q
    ||||||||||| | ||  |||||||| ||| || |||||||||| | |||  ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  64690 gaaataaacataaagaaattatgtttgaaactcaggcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaacca 64789  T
Q  118 tctgtag-----tggctatgtgcattgtcatgcgacatgtctagagatttctcgcaccacagaatctgttggtt 186  Q
    |||||||     ||||||| ||||||||||||||||||||||||||||| |||||| || |||||| |||||||    
T  64790 tctgtagtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgttggtt 64863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 67894 - 67944
Alignment:
Q  298 taatcataatatttttgaaagatcttttgaaaaagaaattgattattatcc 348  Q
    ||||||||||||||| |||| ||||||| |||||||| ||||| |||||||    
T  67894 taatcataatattttcgaaacatctttttaaaaagaagttgatcattatcc 67944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 29270144 - 29269963
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| |||| ||||||||||  |||||||||||||||||||||  |||||     ||||||| |||||||||||||||    
T  29270144 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 29270045  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 228  Q
    || |||||||| || ||| || |||| |||| ||| |||||| ||||| ||||||||||||| ||||||||| |||||||||    
T  29270044 caagtctagaggttgctcacagcacataatccgtttgttgttcgaaagggcagtgagtaatgatatgctttgcagctcagtt 29269963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 17693 - 17874
Alignment:
Q  53 gcaacttttttgtaagcaaaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtag-----tggctatgtgcattgtcatgcga 147  Q
    ||||||||| | ||| |||||||||| |||| ||||||||||  |||||||||||||||||||||  |||||     ||||||| |||||||||||||||    
T  17693 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattgtcatgcga 17792  T
Q  148 catgtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 228  Q
    || |||||||| || ||  || | ||||||| |||||||||| ||||| |||| |||||||| ||||||||| |||||||||    
T  17793 caagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggcagcgagtaatgatatgctttgcagctcagtt 17874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 5083105 - 5083274
Alignment:
Q  71 aaactaagcatttacttgttctttatctgtacattgtcaggaaaccatctgtagt-----ggctatgtgcattgtcatgcgacatgtctagagatttctc 165  Q
    |||||||||||| | || ||||||  |||||||||| ||| ||||||||||||||     |||| | ||||||||||| ||| |||||||||| |  |||    
T  5083105 aaactaagcattcatttcttcttttactgtacattgacagaaaaccatctgtagttgtctggctttttgcattgtcatacgagatgtctagaggtggctc 5083204  T
Q  166 gcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactg 234  Q
       |||||||||| || | ||||||||||| ||||||||||||| ||||||||| ||||||||| |||||    
T  5083205 aatccacagaatccgtggattgtttgaaagggcagtgagtaatgatatgctttgcagctcagttgtactg 5083274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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