View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_28 (Length: 439)
Name: NF5400_high_28
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 21189438 - 21189025
Alignment:
| Q |
18 |
aatcaagatacaaaaattagagtgtacaatattgtaccatttccctctctaaatttgtgacttttcggtgaaattacagtgtcaattgttttcactagag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21189438 |
aatcaagatacaaaaattagagtgtacaatattgtaccatttccctctctaaatttgtgacttttcggtgaaattacagtgtcaattgttttcactagag |
21189339 |
T |
|
| Q |
118 |
nnnnnnncttctcagtttctctttttcgtttcataaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaagacatataaa |
217 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |
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| T |
21189338 |
tttttttcttctccgtttctctttttcatttcataaaatttaacaagttcaaagttctaaagaatagaatataacaattagcagcatcaagacatataaa |
21189239 |
T |
|
| Q |
218 |
taaaacagctagaaacatgagcaaaggaagaagtaacaccttgtagcaaaggaataaaacacccttctatacatgtgagctaagtatattgttccaaccc |
317 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21189238 |
taaaacaactagaaacatgagcaaatgaagaagtaacaccttgtagcaaaggaataaaacacccttctatacatgtgagctaagtatattgttccaaccc |
21189139 |
T |
|
| Q |
318 |
aatgttttagattatgctgtccatttcggtgcattgattttctagatctttatgagnnnnnnnnttaaatttttatatgtttgggatttcgaaaatcaat |
417 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21189138 |
aatgttttagattttgctgtccatttcggtgcattgattttctagatctttatgagaaaaaaaattaaatttttatatgtttgggatttcgaaaatcaat |
21189039 |
T |
|
| Q |
418 |
ttgctagtataatt |
431 |
Q |
| |
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||||||| |||||| |
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| T |
21189038 |
ttgctagaataatt |
21189025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 50 - 260
Target Start/End: Complemental strand, 21205465 - 21205253
Alignment:
| Q |
50 |
tgtaccatttccctctctaaatttgtgacttttcggtgaaattacagtgtcaattgttttcact--agagnnnnnnncttctcagtttctctttttcgtt |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| || || |
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| T |
21205465 |
tgtaccatttccctctctaaatttgtgacttttcggtgaaattacggtgtcaattgttttcactccagagttatttttttctcagtttctctttctcttt |
21205366 |
T |
|
| Q |
148 |
tcataaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaagacatataaataaaacagctagaaacatgagcaaaggaag |
247 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
21205365 |
tcacaaaatttaacaagttcaaagttctaaagaatagaatatagaaattgtcagcatcaagacatataaataaaacaaccagaaacatgagcaaaggaag |
21205266 |
T |
|
| Q |
248 |
aagtaacaccttg |
260 |
Q |
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|||||| |||||| |
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| T |
21205265 |
aagtaaaaccttg |
21205253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 21203585 - 21203504
Alignment:
| Q |
127 |
tctcagtttctctttttcgtttcataaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaag |
208 |
Q |
| |
|
||||||||| ||||| || ||||| |||||| ||||||||||||||| ||| ||||||||||||||||| |||||| |||| |
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| T |
21203585 |
tctcagtttttctttctcttttcacaaaattgaacaagttcaaagttgtaaataatagaatatagcaattctcagcaccaag |
21203504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 21155478 - 21155434
Alignment:
| Q |
216 |
aataaaacagctagaaacatgagcaaaggaagaagtaacaccttg |
260 |
Q |
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|
||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
21155478 |
aataaaacaaccagaaacatgagcaaaggaagaagtaacaccttg |
21155434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 21217235 - 21217184
Alignment:
| Q |
152 |
aaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagca |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||| |||| |||||| |
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|
| T |
21217235 |
aaaatttaacaagttcaaagttctaaagaatagcatatacaaattttcagca |
21217184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 21155374 - 21155328
Alignment:
| Q |
271 |
ataaaacacccttctatacatgtgagctaagtatattgttccaaccc |
317 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||||| |||||||||| |
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| T |
21155374 |
ataaaacaaccttctatacatgtgaacgaagtatatggttccaaccc |
21155328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 21221699 - 21221634
Alignment:
| Q |
152 |
aaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaagacatataaa |
217 |
Q |
| |
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|||||| ||||||||||||||| ||| |||||| ||||| |||| |||| ||||||| ||||||| |
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| T |
21221699 |
aaaattgaacaagttcaaagttgtaaagaatagcatatacaaattctcagtatcaagatatataaa |
21221634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 21645884 - 21645951
Alignment:
| Q |
180 |
aatagaatatagcaattatcagcatcaagacatataaataaaacagctagaaacatgagcaaaggaagaa |
249 |
Q |
| |
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|||||||||||||||||||||||| |||| | ||||||| |||| || ||||||||||||||||||||| |
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| T |
21645884 |
aatagaatatagcaattatcagcaccaag--agataaatagaacaacttgaaacatgagcaaaggaagaa |
21645951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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