View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_37 (Length: 390)
Name: NF5400_high_37
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 381
Target Start/End: Complemental strand, 14095126 - 14094779
Alignment:
| Q |
20 |
caatcatatagtagcaccccaaatttatatatgcaacatatgattgccaccctgatccaacagccactcctgtttttacatcgtcaatcaatcataatcg |
119 |
Q |
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| T |
14095126 |
caatcatatagtagcaccccaaatttatatatgcaacatatgattgccaccctgatccaacagccactcctgtttttacatcgtcaatcaatcataatcg |
14095027 |
T |
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| Q |
120 |
tcagaacattaaaacgtttcataactatttttaaaatcattcatatatttgagattaaatatttgaaattgaaatgttaattgttaaggtgatacctgat |
219 |
Q |
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| T |
14095026 |
tcagaacattaaaacgtttcaaaactatttttaaaatcatgcatatatttgagatt--------------gaaatgttaattgttaaggtgatacctgat |
14094941 |
T |
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| Q |
220 |
agaactggttggacactgttgagaagaattgtgaatgctaatagaagagaaagcttgctaacttcatcaagaacaggtttactagtagagaatatgtagc |
319 |
Q |
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| T |
14094940 |
agaactggttggacactgttgagaagaattgtgaatgctaatagaagagaaagcttgctaacttcatcaagaacaggtttactagtagagaatatgtagc |
14094841 |
T |
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| Q |
320 |
caaatttatcgtgaaatatcataatcaacatccaaaagaaaagtccaattattgatgatgtc |
381 |
Q |
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| T |
14094840 |
caaatttatcatgaaatatcataatcaacatccaaaagaaaagtccaattattgatgatgtc |
14094779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 1132142 - 1132181
Alignment:
| Q |
91 |
gtttttacatcgtcaatcaatcataatcgtcagaacatta |
130 |
Q |
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| T |
1132142 |
gtttttacatcgtcaatcaatcataaccgtcagatcatta |
1132181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 15867685 - 15867643
Alignment:
| Q |
92 |
tttttacatcgtcaatcaatcataatcgtcagaacattaaaac |
134 |
Q |
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|||||||| |||||||||||||||||||||| | ||||||||| |
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| T |
15867685 |
tttttacaacgtcaatcaatcataatcgtcatatcattaaaac |
15867643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 15920285 - 15920245
Alignment:
| Q |
92 |
tttttacatcgtcaatcaatcataatcgtcagaacattaaa |
132 |
Q |
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| T |
15920285 |
tttttacaccgtcaatcaatcataatcgtgagatcattaaa |
15920245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 3757029 - 3757001
Alignment:
| Q |
92 |
tttttacatcgtcaatcaatcataatcgt |
120 |
Q |
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| T |
3757029 |
tttttacatcgtcaatcaatcataatcgt |
3757001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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