View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_44 (Length: 367)
Name: NF5400_high_44
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 55694690 - 55695040
Alignment:
| Q |
1 |
aatattagtccaatggattataaacaacaaattagtgtagatctctttccctgtgtttatttttcataatccaaaaaagatcaataatcaatttgctctt |
100 |
Q |
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| T |
55694690 |
aatattagtccaatggattataaacaacaaattagtgtagatctctttccctgtgtttatttttcataatccaaaaaagatcaataatcaatttgctctt |
55694789 |
T |
|
| Q |
101 |
nnnnnnnttaattgattctactacattgtattattgttatttaaagcagaacttcaatcaaaaatatctatcaagttatttgaagataagacatatgaat |
200 |
Q |
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| T |
55694790 |
gaaaaaat-aattgattctactacattgtatttttattactagaagcagcacttcaatcaaaaatatctatcaagttatttgaatataagacatatgaat |
55694888 |
T |
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| Q |
201 |
tatgaagtatgatttgatcatgttccctatgagttacttggtcatataaacataacaaaacatgttgagcattggtggttaatgaaaat-ggattctgca |
299 |
Q |
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| T |
55694889 |
tatgaagtatgttttgatcatgttccctatgagttacttggtcatataaacataacaaaatatgtttagcattagtgtttaatgataatgggatattgca |
55694988 |
T |
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| Q |
300 |
ggttgaaacacagcaagtagcaacaaccgtgacagaaaatgaaacagttgag |
351 |
Q |
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| T |
55694989 |
ggttgaaacacagcaagcaccaacaactgtgacagaaaaggaaacagttgag |
55695040 |
T |
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