View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_45 (Length: 357)
Name: NF5400_high_45
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_45 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 41181119 - 41180968
Alignment:
| Q |
4 |
atgaatcgaatatgcaatattatgaaggctaggttgttgtcaaaaagcaacaaaccgtataacctaagtacaatgtcaaatgagcaatggccactgcatt |
103 |
Q |
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| T |
41181119 |
atgaatcgaatatacaatagtatgaaggctaggttgttgtcaaaaagcaacaaaccgtataacctaagtacaatgtcaaatgagcagtggccactgcatt |
41181020 |
T |
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| Q |
104 |
gccgtctgattgcaatgaaaaataattaagggtttccacatttttcgcgaac |
155 |
Q |
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| T |
41181019 |
gccgtttgattgcaatgaaaaataattaagggttcccacatttttcgtgaac |
41180968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 171 - 357
Target Start/End: Complemental strand, 41180916 - 41180719
Alignment:
| Q |
171 |
aacccaagtacaacagttaccacattacaaaccaaccaaaagcnnnnnnnttaagaacaaagcacctcaaacaaa-gagggcagaaatcaatcta----- |
264 |
Q |
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| T |
41180916 |
aacccaagtacaacagttaccacattacaaaccaaccaaaagcagaaaaat-aagaacaaagcacctcaaacaaaagagggcagaaatcaatctaaaatc |
41180818 |
T |
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| Q |
265 |
------gaaacagataaaccagcactatctctaagaagaagaggaagtaagaaagtaggtggggctggccaccattgtgaagataacaaggcaggcccc |
357 |
Q |
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| T |
41180817 |
aatttagaaacggataaaccagcactatctctatgaagaagaggaagtaagaaagtaggtggggctggccaccattgtgaagataacaaggcaagcccc |
41180719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 43339983 - 43339895
Alignment:
| Q |
269 |
cagataaaccagcactatctctaagaagaagaggaagtaagaaagtaggtggggctggccaccattgtgaagataacaaggcaggcccc |
357 |
Q |
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| T |
43339983 |
cagataaaccagcactatccctaagaagaagagaaagtaagaaagtaggtggggctggccaccattgtgaagataacaaggcaagcccc |
43339895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 9256425 - 9256492
Alignment:
| Q |
77 |
tgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
144 |
Q |
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| T |
9256425 |
tgtcagatgagcaagggccactgcattgccgtctgaatgcaatgaaaaataagtaagggttcccacat |
9256492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 43340068 - 43339980
Alignment:
| Q |
165 |
ggcctgaacccaagtacaacagttaccacattacaaaccaaccaaaagcnnnnnnnttaagaacaaagcacctcaaacaaagagggcaga |
254 |
Q |
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| T |
43340068 |
ggcctgaatccaagtacaacagttatcacattacaaacaaaccaaaagcaaagaaacaaag-acaaagcacctcaaacaaagagggcaga |
43339980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 15218219 - 15218145
Alignment:
| Q |
70 |
agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
144 |
Q |
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| T |
15218219 |
agtacagtgtcaaatgagcaagggccgctgcattgccgcctggatgtagtgaaaaataagcaagggttcccacat |
15218145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 27453102 - 27453028
Alignment:
| Q |
70 |
agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
144 |
Q |
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| T |
27453102 |
agtacaatgtcaaatgagcaagggccgctgcatcaccgcctggatgtagtgaaaaataagcaagggtttccacat |
27453028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 45329591 - 45329517
Alignment:
| Q |
70 |
agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
144 |
Q |
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| T |
45329591 |
agtacagtgtcaaatgaacaagggccactgcatcgccgtctggatgtagtgaaaaataagcaagggttcccacat |
45329517 |
T |
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