View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_high_46 (Length: 353)

Name: NF5400_high_46
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_high_46
NF5400_high_46
[»] chr3 (43 HSPs)
chr3 (3-353)||(4535160-4535503)
chr3 (3-219)||(48390513-48390727)
chr3 (3-243)||(47883174-47883412)
chr3 (106-244)||(10949672-10949811)
chr3 (56-246)||(4308631-4308821)
chr3 (56-243)||(51727356-51727543)
chr3 (106-244)||(20031743-20031883)
chr3 (58-246)||(35918301-35918489)
chr3 (62-243)||(11079169-11079351)
chr3 (58-243)||(9604964-9605150)
chr3 (106-243)||(27762419-27762557)
chr3 (56-244)||(25690706-25690894)
chr3 (56-243)||(27101610-27101797)
chr3 (155-244)||(5858196-5858285)
chr3 (131-243)||(22627583-22627695)
chr3 (160-246)||(47878598-47878684)
chr3 (162-246)||(54192894-54192978)
chr3 (155-246)||(10595453-10595544)
chr3 (160-246)||(16461850-16461936)
chr3 (131-243)||(43225827-43225939)
chr3 (160-243)||(29914401-29914484)
chr3 (160-243)||(29963554-29963637)
chr3 (56-151)||(43228103-43228198)
chr3 (155-242)||(54188160-54188247)
chr3 (158-242)||(29956218-29956302)
chr3 (158-242)||(30005373-30005457)
chr3 (161-244)||(10208448-10208531)
chr3 (161-244)||(10100539-10100622)
chr3 (160-246)||(10094515-10094601)
chr3 (160-246)||(10201401-10201487)
chr3 (178-246)||(10901395-10901463)
chr3 (169-244)||(10896654-10896729)
chr3 (56-117)||(29956510-29956571)
chr3 (56-117)||(30005665-30005726)
chr3 (106-240)||(38002494-38002616)
chr3 (155-219)||(10613221-10613285)
chr3 (59-138)||(20031660-20031739)
chr3 (169-243)||(45882659-45882733)
chr3 (193-243)||(6066241-6066291)
chr3 (56-102)||(43225947-43225993)
chr3 (3-41)||(54188359-54188397)
chr3 (3-43)||(10949551-10949591)
chr3 (3-43)||(11079367-11079407)
[»] chr5 (16 HSPs)
chr5 (9-243)||(42237954-42238187)
chr5 (55-246)||(40222411-40222602)
chr5 (56-246)||(6747041-6747231)
chr5 (56-243)||(1240078-1240265)
chr5 (56-243)||(10529451-10529638)
chr5 (56-241)||(39854226-39854411)
chr5 (56-243)||(6744801-6744988)
chr5 (56-244)||(4409796-4409984)
chr5 (106-238)||(17841684-17841816)
chr5 (136-243)||(2298421-2298528)
chr5 (160-244)||(35385879-35385963)
chr5 (160-246)||(25452143-25452229)
chr5 (131-244)||(22672503-22672616)
chr5 (160-243)||(25445219-25445302)
chr5 (160-237)||(1170470-1170547)
chr5 (195-246)||(34477584-34477635)
[»] chr8 (14 HSPs)
chr8 (3-245)||(21033518-21033759)
chr8 (59-243)||(23179907-23180091)
chr8 (106-246)||(3275949-3276090)
chr8 (56-235)||(22685018-22685197)
chr8 (155-244)||(29555229-29555318)
chr8 (155-243)||(9021550-9021638)
chr8 (160-246)||(4812935-4813021)
chr8 (160-246)||(25684293-25684379)
chr8 (160-246)||(590463-590549)
chr8 (160-246)||(28332281-28332367)
chr8 (131-243)||(16757664-16757776)
chr8 (160-243)||(28327561-28327644)
chr8 (131-246)||(28895150-28895265)
chr8 (131-246)||(16752940-16753055)
[»] chr4 (25 HSPs)
chr4 (3-246)||(4884528-4884763)
chr4 (3-244)||(4556352-4556586)
chr4 (3-243)||(16689233-16689472)
chr4 (59-243)||(25699401-25699586)
chr4 (56-244)||(31300073-31300261)
chr4 (56-239)||(8631775-8631958)
chr4 (56-243)||(47868195-47868382)
chr4 (131-243)||(8528918-8529030)
chr4 (131-244)||(18586615-18586728)
chr4 (155-243)||(16489001-16489089)
chr4 (155-246)||(15316627-15316718)
chr4 (106-244)||(7050664-7050803)
chr4 (159-245)||(15311992-15312078)
chr4 (106-197)||(4569751-4569843)
chr4 (155-239)||(15830817-15830901)
chr4 (155-243)||(40636868-40636956)
chr4 (131-241)||(2485281-2485390)
chr4 (160-243)||(11853202-11853285)
chr4 (158-243)||(6764654-6764739)
chr4 (56-117)||(2485227-2485288)
chr4 (56-102)||(6764774-6764820)
chr4 (62-125)||(7050578-7050641)
chr4 (169-243)||(16631068-16631142)
chr4 (195-247)||(3825064-3825116)
chr4 (191-243)||(26086240-26086292)
[»] chr6 (27 HSPs)
chr6 (56-244)||(26084724-26084912)
chr6 (101-243)||(26642829-26642971)
chr6 (101-243)||(26748795-26748937)
chr6 (56-244)||(22352199-22352387)
chr6 (56-244)||(26064755-26064943)
chr6 (56-239)||(22343148-22343331)
chr6 (56-243)||(28241674-28241860)
chr6 (59-186)||(33215535-33215662)
chr6 (106-243)||(13467898-13468036)
chr6 (155-244)||(17695294-17695383)
chr6 (159-245)||(1230683-1230769)
chr6 (160-246)||(13883125-13883211)
chr6 (160-246)||(31249160-31249246)
chr6 (160-246)||(35201772-35201858)
chr6 (159-243)||(25466347-25466431)
chr6 (160-243)||(26887671-26887754)
chr6 (160-243)||(30975145-30975228)
chr6 (160-243)||(30981584-30981667)
chr6 (160-243)||(30987748-30987831)
chr6 (160-246)||(35209007-35209093)
chr6 (131-244)||(13878379-13878492)
chr6 (160-230)||(25941330-25941400)
chr6 (131-243)||(16785572-16785684)
chr6 (169-246)||(15533146-15533223)
chr6 (56-102)||(1230601-1230647)
chr6 (208-245)||(33215497-33215534)
chr6 (104-140)||(17696025-17696061)
[»] chr2 (21 HSPs)
chr2 (59-244)||(38190648-38190834)
chr2 (59-244)||(37171098-37171284)
chr2 (155-246)||(20050466-20050557)
chr2 (155-246)||(30478663-30478754)
chr2 (160-246)||(22712943-22713029)
chr2 (155-244)||(27518063-27518152)
chr2 (155-243)||(12781663-12781751)
chr2 (56-186)||(45280337-45280467)
chr2 (169-246)||(17943207-17943284)
chr2 (155-243)||(35894683-35894771)
chr2 (159-246)||(2740591-2740678)
chr2 (160-246)||(39686633-39686719)
chr2 (160-245)||(2735856-2735941)
chr2 (155-243)||(20055212-20055300)
chr2 (160-244)||(22717673-22717757)
chr2 (160-243)||(39679698-39679781)
chr2 (131-243)||(33674824-33674936)
chr2 (160-243)||(17462088-17462171)
chr2 (160-243)||(45567062-45567145)
chr2 (56-117)||(5377785-5377846)
chr2 (106-150)||(21521097-21521141)
[»] chr1 (12 HSPs)
chr1 (106-243)||(25133681-25133819)
chr1 (102-244)||(2401585-2401727)
chr1 (101-246)||(2393670-2393815)
chr1 (155-243)||(21353769-21353857)
chr1 (160-243)||(9521367-9521450)
chr1 (56-186)||(13449902-13450032)
chr1 (161-246)||(9526114-9526199)
chr1 (158-245)||(2617278-2617365)
chr1 (131-244)||(2232261-2232374)
chr1 (172-243)||(23689313-23689384)
chr1 (56-117)||(2617384-2617445)
chr1 (195-243)||(51749778-51749826)
[»] chr7 (18 HSPs)
chr7 (106-243)||(44144300-44144438)
chr7 (56-241)||(40946076-40946261)
chr7 (155-243)||(34547285-34547373)
chr7 (155-243)||(44512969-44513057)
chr7 (155-246)||(7464941-7465032)
chr7 (155-246)||(30246639-30246730)
chr7 (59-243)||(42006316-42006501)
chr7 (155-245)||(8378861-8378951)
chr7 (160-246)||(7074437-7074523)
chr7 (160-246)||(25405043-25405129)
chr7 (155-243)||(25351005-25351093)
chr7 (155-243)||(25356699-25356787)
chr7 (160-243)||(7069433-7069516)
chr7 (160-246)||(3320496-3320583)
chr7 (171-246)||(25409800-25409875)
chr7 (160-237)||(3325244-3325321)
chr7 (56-117)||(48457525-48457586)
chr7 (59-138)||(44144211-44144290)
[»] scaffold0038 (1 HSPs)
scaffold0038 (56-243)||(41836-42022)
[»] scaffold1764 (1 HSPs)
scaffold1764 (159-246)||(1105-1192)
[»] scaffold0256 (1 HSPs)
scaffold0256 (164-243)||(15976-16055)
[»] scaffold0209 (1 HSPs)
scaffold0209 (160-244)||(17413-17497)
[»] scaffold0004 (1 HSPs)
scaffold0004 (155-243)||(188665-188753)
[»] scaffold0552 (2 HSPs)
scaffold0552 (158-243)||(1264-1349)
scaffold0552 (55-102)||(1182-1229)
[»] scaffold0131 (1 HSPs)
scaffold0131 (131-241)||(30795-30905)
[»] scaffold0006 (1 HSPs)
scaffold0006 (160-219)||(224517-224576)
[»] scaffold0250 (1 HSPs)
scaffold0250 (174-246)||(2626-2698)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 353
Target Start/End: Complemental strand, 4535503 - 4535160
Alignment:
Q  3 atcacctgatagaaggcttataattatagtggaaagtaaccatttnnnnnnn-ttgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatc 101  Q
    |||| |||||| ||| ||||||||||||||||||||||||| |||        |||||||||||||||||| ||||||||||||||||||||||||||||    
T  4535503 atcatctgatacaagacttataattatagtggaaagtaaccctttaaacaaaattgaaacaaatcttcactgaaaatacgttttgtttttatcctcaatc 4535404  T
Q  102 gtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgt 201  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  4535403 gtatcatcgtgccacgttacgattcaattgtggcacaatttttccaatgaagatctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgt 4535304  T
Q  202 gacacaattctccagattcttgattttaagttaactctcacaattggcatagttgttattaaactagactttgttgcacggagaaaagagttttattgta 301  Q
    || |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4535303 gatatgattctccagattcatgattttaagttaactctcacaattggcatagttgttattaaactagactttgttgcacggagaaaagagttttattgta 4535204  T
Q  302 atgttgtaatgttgtaaatcgtgatacaaaatacttaagatatgatgtaatt 353  Q
    |||||        |||||||||||||||||||| ||||||||||||||||||    
T  4535203 atgtt--------gtaaatcgtgatacaaaatatttaagatatgatgtaatt 4535160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 48390513 - 48390727
Alignment:
Q  3 atcacctgatagaaggcttataattatagtggaaagtaaccatttnnnnnnnttgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcg 102  Q
    |||| ||||||  ||||||||| |||||||||||||||||| ||        |||||||||||||||||| |||||||||||   || | ||||| ||||    
T  48390513 atcatctgatacgaggcttatatttatagtggaaagtaaccctt---aaaagttgaaacaaatcttcactgaaaatacgtttctattatttcctccatcg 48390609  T
Q  103 tatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctc-agaatcttgtttcaacaatcgtggcacgttgcttctccatcgt 201  Q
    || ||||||||||||||||||||| || || |||||||||||||||||||  |||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  48390610 taccatcgtgccacgttacgattccatcgtagcacgatttttccagtgacttcctccagaatcttgcttcaacaattgtggcacgttgcttctccatcgt 48390709  T
Q  202 gacacaattctccagatt 219  Q
    |||||| |||||||||||    
T  48390710 gacacatttctccagatt 48390727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 47883174 - 47883412
Alignment:
Q  3 atcacctgatagaaggcttataattatagtggaaagtaaccatttnnnnnnnttgaaacaaatcttcactaaaaatacgttt-tgtttttatcctcaatc 101  Q
    |||| |||||| |||||||||| |||||||||||||||||| ||         || |||||||||||||| ||||||||||| |||| || || |||| |    
T  47883174 atcatctgatacaaggcttatatttatagtggaaagtaacccttaaaata---tggaacaaatcttcactgaaaatacgtttatgttattttcttcaa-c 47883269  T
Q  102 gtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacc-tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcg 200  Q
    ||| |||||||||||||||| |||| |||||||||||| ||||||||||||   | |||| |||||||||||||||||||| ||||||||||||||||||    
T  47883270 gtaccatcgtgccacgttacaattccattgtggcacgaattttccagtgacttgcatcaggatcttgtttcaacaatcgtgacacgttgcttctccatcg 47883369  T
Q  201 tgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    || |||  ||||||| |||| ||||||||||||||||||||||    
T  47883370 tggcacgtttctccaaattcctgattttaagttaactctcaca 47883412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 10949672 - 10949811
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct-cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgac 204  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||   || ||| ||||||||||||||||||||||||||||||||||||||||| |    
T  10949672 catcgtgccacgttacgattctatcgtggcacgaattttccagtgacttgcttcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggc 10949771  T
Q  205 acaattctccagattcttgattttaagttaactctcacaa 244  Q
    ||  |||||||||||| |||||||||||||||||||||||    
T  10949772 acgtttctccagattcctgattttaagttaactctcacaa 10949811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 56 - 246
Target Start/End: Original strand, 4308631 - 4308821
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| |||| | |||| |||| |||||||||||||||||||||   |    
T  4308631 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtgattgc 4308730  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
       ||||| ||| ||||||||||||||||||  |||||| ||||||| ||| |||||||||| |  |||||||||||||||||||||||||    
T  4308731 tctagaattttgcttcaacaatcgtggcacgaagcttcttcatcgtggcacgattctccagaattctgattttaagttaactctcacaatt 4308821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 51727356 - 51727543
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||  | ||||||| |||| | ||||  ||| |||||||||||||||||||||   |    
T  51727356 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcacaccatcgtggcacgattcgatcaaatcgtggcacgatttttccagtgattgc 51727455  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
      |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  51727456 tccagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcaca 51727543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 20031743 - 20031883
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacc-tcagaatcttgtttcaacaatcgtggcacgttgc-ttctccatcgtga 203  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||  || ||||||||||| ||||||||||||||||| |||| ||||||||||||     
T  20031743 catcgtgccacgttacgattccatcgtggcacgatttttccagtgacttccttcagaatcttgcttcaacaatcgtggcacattgctttctccatcgtgg 20031842  T
Q  204 cacaattctccagattcttgattttaagttaactctcacaa 244  Q
    |||  |||||||||||  |||||||||||||||||||||||    
T  20031843 cacgtttctccagatttctgattttaagttaactctcacaa 20031883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 58 - 246
Target Start/End: Original strand, 35918301 - 35918489
Alignment:
Q  58 aaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct 157  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| |||  | |||| |||| |||  ||||||||||||||||  ||      
T  35918301 aaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcactattcgatccaatcgtgctacgatttttccagtgattactc 35918400  T
Q  158 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||| | |  |||||||||||||||||||||||||    
T  35918401 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccataattctgattttaagttaactctcacaatt 35918489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 62 - 243
Target Start/End: Complemental strand, 11079351 - 11079169
Alignment:
Q  62 aaatcttcactaaaaatacgttt-tgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct-ca 159  Q
    ||||||||||| ||||||||||| |||| ||  | ||| | ||| ||||||||||||||||||||| || ||||||||| ||||||||||||   || ||    
T  11079351 aaatcttcactgaaaatacgtttatgttatttccttcagt-gtaccatcgtgccacgttacgattccatcgtggcacgaattttccagtgacttgcttca 11079253  T
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    | ||||| ||| ||||||||||||||||||||||||||||||| |||  |||||||||||  ||||||||||||||||||||||    
T  11079252 ggatcttttttaaacaatcgtggcacgttgcttctccatcgtggcacgtttctccagattactgattttaagttaactctcaca 11079169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 9604964 - 9605150
Alignment:
Q  58 aaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacga-tttttccagtgacgacc 156  Q
    ||||||||||||| |||||||| ||||| |||||||| ||||||| | |||||||||||| | ||||||| | ||||||||| ||||||||||||   |     
T  9604964 aaacaaatcttcaataaaaatatgttttatttttatcttcaatcgcaccatcgtgccacgatgcgattcagtcgtggcacgattttttccagtgattgct 9605063  T
Q  157 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
     |||||| ||| ||||||||||||||||||   ||||||||||||  ||| |||||||||| |  ||||||||||||||||||||||    
T  9605064 ccagaattttgcttcaacaatcgtggcacgaaacttctccatcgtagcacgattctccagaattctgattttaagttaactctcaca 9605150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 27762419 - 27762557
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct-cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgac 204  Q
    ||||||||||||||||||||| || ||||||| | ||||||||||||    | ||| ||||||||||||||||||||||||||||||||||||||||| |    
T  27762419 catcgtgccacgttacgattccatcgtggcacaaattttccagtgacttgtttcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggc 27762518  T
Q  205 acaattctccagattcttgattttaagttaactctcaca 243  Q
    ||  |||| ||||||| ||||||||||||||||||||||    
T  27762519 acgtttcttcagattcctgattttaagttaactctcaca 27762557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 244
Target Start/End: Original strand, 25690706 - 25690894
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| |||  | |||| ||||  ||||||||||||||||||||   |    
T  25690706 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacaattcgatccaatcatggcacgatttttccagtgattgc 25690805  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
      |||||| ||  ||||||||||||||||||  |||||||||||||| ||| ||||  |||| |  |||||||||||||||||||||||    
T  25690806 tccagaatttttcttcaacaatcgtggcacgaagcttctccatcgtggcacgattcatcagaattctgattttaagttaactctcacaa 25690894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 27101610 - 27101797
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | |||| || |||| | |||| |||| |||||||||||||||||||||        
T  27101610 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcttggcacgattcgatccaatcgtggcacgatttttccagtgattgt 27101709  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
      |||||| ||| |||||||||| ||||||    ||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  27101710 tccagaattttgcttcaacaatcatggcacaaaacttctccatcgtggcacgattctccagaattctgattttaagttaactctcaca 27101797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 5858285 - 5858196
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  5858285 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagattcctgattttaagttaactctcacaa 5858196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 22627583 - 22627695
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||  |  ||||||||||||| |||||||||||||||  | ||||||||||||||| ||| || |||||||||  |||||||||    
T  22627583 gtggcacgatttttccagtagcttcctcagaatcttgcttcaacaatcgtggcgagatgcttctccatcgtggcacgatactccagatttctgattttaa 22627682  T
Q  231 gttaactctcaca 243  Q
    |||||||||||||    
T  22627683 gttaactctcaca 22627695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 47878598 - 47878684
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  47878598 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaatt 47878684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 54192978 - 54192894
Alignment:
Q  162 atcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  54192978 atcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaatt 54192894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 10595453 - 10595544
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||||||||| ||||||||||||||| |  || |||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  10595453 cctcagaatcttgcttcaacaatcgtggcgcaatgtttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaatt 10595544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 16461936 - 16461850
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  16461936 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaatt 16461850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 43225939 - 43225827
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||||   |  |||||| ||| |||||||||||| |||||  |||||||||||||| ||| |||||||||| |  |||||||||    
T  43225939 gtggcacgatttttccagtgattgctccagaattttgcttcaacaatcgtagcacgaagcttctccatcgtggcacgattctccagaattctgattttaa 43225840  T
Q  231 gttaactctcaca 243  Q
    |||||||||||||    
T  43225839 gttaactctcaca 43225827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 29914401 - 29914484
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||| ||||    
T  29914401 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactcccaca 29914484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 29963554 - 29963637
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||| ||||    
T  29963554 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactcccaca 29963637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 43228198 - 43228103
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtga 151  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| |||| | |||| |||| |||||||||||||||| ||||    
T  43228198 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacgattcgatccaatcgtggcacgatttttcccgtga 43228103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 54188247 - 54188160
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcac 242  Q
    |||||| |||||| ||||||||||||||| || ||||||||||||||| ||| ||||| ||||||  |||||||||||||||||||||    
T  54188247 cctcaggatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattcttcagatttctgattttaagttaactctcac 54188160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 29956302 - 29956218
Alignment:
Q  158 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcac 242  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||||||| ||| |||||| |  |||||||||||||||||||||    
T  29956302 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtgacacgattatccagaattctgattttaagttaactctcac 29956218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 30005457 - 30005373
Alignment:
Q  158 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcac 242  Q
    |||||| ||| ||||||||||||||||||  |||||||||||||||||| ||| |||||| |  |||||||||||||||||||||    
T  30005457 cagaattttgcttcaacaatcgtggcacgaagcttctccatcgtgacacgattatccagaattctgattttaagttaactctcac 30005373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 10208448 - 10208531
Alignment:
Q  161 aatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    ||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||    
T  10208448 aatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaa 10208531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 10100539 - 10100622
Alignment:
Q  161 aatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    ||||||| |||||| |||||||| || ||||||||||||||| ||| || ||| |||||  |||||||||||||||||||||||    
T  10100539 aatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactctagatttctgattttaagttaactctcacaa 10100622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 10094515 - 10094601
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| |||||| | || |||||||||||||||  || || |||||||||  |||||||||||||||||||||||||    
T  10094515 gaatcttgcttcaaccatcgtgacgcgatgcttctccatcgtggaacgatactccagatttctgattttaagttaactctcacaatt 10094601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 10201401 - 10201487
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| |||||||| || |||||||||||||||  || || |||||||||  |||||||||||||| ||||||||||    
T  10201401 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggaacgatactccagatttctgattttaagttaaatctcacaatt 10201487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 10901463 - 10901395
Alignment:
Q  178 cgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  10901463 cgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaatt 10901395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 10896729 - 10896654
Alignment:
Q  169 ttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    |||| |||||||||| || ||||||||||||||| ||| || ||||| |||  |||||||||||||||||||||||    
T  10896729 ttcagcaatcgtggcgcgatgcttctccatcgtggcacgatactccatatttctgattttaagttaactctcacaa 10896654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 29956571 - 29956510
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacg 117  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| ||||    
T  29956571 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacg 29956510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 30005726 - 30005665
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacg 117  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| ||||    
T  30005726 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacg 30005665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 38002616 - 38002494
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgaca 205  Q
    |||||||| |||||||||||| || ||||||||| ||||||||||||            ||| |||||||||| || || ||||||| |||||| |||||    
T  38002616 catcgtgcaacgttacgattccatcgtggcacgaattttccagtgac------------ttgcttcaacaatcatgacatgttgcttatccatcatgaca 38002529  T
Q  206 caattctccagattcttgattttaagttaactctc 240  Q
    |  |||||||||||  |||||||||||||||||||    
T  38002528 cgtttctccagattactgattttaagttaactctc 38002494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 10613221 - 10613285
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagatt 219  Q
    ||||||||||||| ||||||||||||||  || || |||||||||||| ||| ||||||||||||    
T  10613221 cctcagaatcttgcttcaacaatcgtggtgcgatgtttctccatcgtggcacgattctccagatt 10613285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 20031660 - 20031739
Alignment:
Q  59 aacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacg 138  Q
    |||||||||||||  |||||||||||   || ||||||| |||||| |||| |||||||||||||||  || ||||||||    
T  20031660 aacaaatcttcacggaaaatacgtttctgttatatcctccatcgtaccatcatgccacgttacgattacatcgtggcacg 20031739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 45882733 - 45882659
Alignment:
Q  169 ttcaacaatcgtggcacgttgcttctccatcgtgacac-aattctccagattcttgattttaagttaactctcaca 243  Q
    |||||| |||||||||||||| |||||||||||| ||| | || | |||| || ||||||||||||||||||||||    
T  45882733 ttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 45882659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 6066241 - 6066291
Alignment:
Q  193 ctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||||| ||||||||| ||||  | ||||||||||||||||||||||    
T  6066241 ctccatcgtgccacaattctgcagaaacctgattttaagttaactctcaca 6066291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 43225993 - 43225947
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcg 102  Q
    ||||||||||||||| ||||||||| |||| |||||||| |||||||    
T  43225993 tgaaacaaatcttcaataaaaatacattttatttttatcttcaatcg 43225947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 54188397 - 54188359
Alignment:
Q  3 atcacctgatagaaggcttataattatagtggaaagtaa 41  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  54188397 atcacctgatacaaggcttatatttatagtggaaagtaa 54188359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 10949551 - 10949591
Alignment:
Q  3 atcacctgatagaaggcttataattatagtggaaagtaacc 43  Q
    |||| |||||| |||||||||| ||||||||||||||||||    
T  10949551 atcatctgatacaaggcttatatttatagtggaaagtaacc 10949591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 11079407 - 11079367
Alignment:
Q  3 atcacctgatagaaggcttataattatagtggaaagtaacc 43  Q
    |||| |||||| |||||||||| ||||||||||||||||||    
T  11079407 atcatctgatacaaggcttatatttatagtggaaagtaacc 11079367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 42238187 - 42237954
Alignment:
Q  9 tgatagaaggcttataattatagtggaaagtaaccatttnnnnnnnttgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcat 108  Q
    ||||| |||| ||||| |||||||||||||||||| |||       |||||||||||||||||| ||||||||||||  ||||||||||||||| | |||    
T  42238187 tgatacaaggtttatatttatagtggaaagtaaccctttaaaaaa-ttgaaacaaatcttcactgaaaatacgtttttgttttatcctcaatcgcaccat 42238089  T
Q  109 cgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaa 208  Q
    ||||||||||| |||||  || ||||||||||||||||||||||  | ||| ||||||| |||||||||||||||||||||||||||||||||| ||| |    
T  42238088 cgtgccacgttgcgatttcatcgtggcacgatttttccagtgactgcttcaaaatcttgcttcaacaatcgtggcacgttgcttctccatcgtggcacga 42237989  T
Q  209 ttctccagattcttgattttaagttaactctcaca 243  Q
    |||||||||||  ||||||||||||||||||||||    
T  42237988 ttctccagatttctgattttaagttaactctcaca 42237954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 55 - 246
Target Start/End: Complemental strand, 40222602 - 40222411
Alignment:
Q  55 ttgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacga 154  Q
    ||||||||||| |||||| |||| |||||||  ||||||||||||||||| |||||||||||||| |||||  || |||||||||||||||| |||||      
T  40222602 ttgaaacaaattttcactgaaaacacgtttttattttatcctcaatcgtaccatcgtgccacgttgcgatttcatcgtggcacgatttttcctgtgactg 40222503  T
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  40222502 cttcagaatcttgcttcaacaatcgtggcacgttgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaatt 40222411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 56 - 246
Target Start/End: Complemental strand, 6747231 - 6747041
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| |||| | |||| |||| ||||||||| |||||||||||   |    
T  6747231 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacgattcgatccaatcgtggcacgacttttccagtgattgc 6747132  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
      |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||||    
T  6747131 tccagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaatt 6747041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 1240265 - 1240078
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    |||||||||| |||| |||||||||||||| |||||||| ||||| | | ||||||| |||| | |||| |||| |||||||||||||||||||||   |    
T  1240265 tgaaacaaatgttcaataaaaatacgttttatttttatcttcaattgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtgattgc 1240166  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
      |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  1240165 tccagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcaca 1240078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 10529451 - 10529638
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||| ||||||||| |||||||||||||| |||||||| ||||||| ||||||||| |||| | ||||  ||| |||||||||||||||||||||   |    
T  10529451 tgaaataaatcttcaataaaaatacgttttatttttatcttcaatcgcatcatcgtggcacgattcgatctaatcgtggcacgatttttccagtgattgc 10529550  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
       ||||| ||| ||||||||||||||||||  ||||||| |||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  10529551 tctagaattttgcttcaacaatcgtggcacgaagcttctcgatcgtggcacgattctccagaattctgattttaagttaactctcaca 10529638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 56 - 241
Target Start/End: Complemental strand, 39854411 - 39854226
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | |||||||||||| | ||||||||  ||| |||||||||||||||||   |    
T  39854411 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtgccacgatgcgattcaaccgtgacacgatttttccagtgattgc 39854312  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctca 241  Q
      |||||| ||| ||||||||||||||||||   |||||| ||| |||||| |||||||||| |  | ||||||||||||||||||    
T  39854311 tccagaattttgcttcaacaatcgtggcacgaaacttctctatcatgacacgattctccagaattctaattttaagttaactctca 39854226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 6744988 - 6744801
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||  |||||||||||||| |||||||| ||||||| | ||||||  |||| | |||| |||| |||||||||||||||||||||   |    
T  6744988 tgaaacaaatcttcgataaaaatacgttttatttttatcttcaatcgcaccatcgtagcacgattcgatccaatcgtggcacgatttttccagtgattgc 6744889  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
      |||||| ||| ||||||||||||||||||  | |||||||||||| ||| |||||||||| |  ||||||||| ||||||||||||    
T  6744888 tccagaattttgcttcaacaatcgtggcacgaagtttctccatcgtggcacgattctccagaattctgattttaaattaactctcaca 6744801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 244
Target Start/End: Complemental strand, 4409984 - 4409796
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| ||||||||  | |||| | ||||||| |||| | |||| ||||||||||||||||||||||||||   |    
T  4409984 tgaaacaaatcttcaataaaaatacgttttatttttatctgccatcgcaccatcgtggcacgattcgatccaattgtggcacgatttttccagtgattgc 4409885  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
      |||||| ||| ||||||||||||||||||  |||||| ||||||| ||| ||||| ||||    |||||||||||||||| ||||||    
T  4409884 tccagaattttgcttcaacaatcgtggcacgaagcttcttcatcgtggcacgattcttcagaactctgattttaagttaactttcacaa 4409796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 17841684 - 17841816
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct-cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgac 204  Q
    ||||||||||||||| ||||| || ||||||||| ||||||| ||||   || ||| ||||||||| |||||||||| || |||||||||||||||||||    
T  17841684 catcgtgccacgttatgattccatcgtggcacgaattttccaatgacttgcttcaggatcttgttt-aacaatcgtgacatgttgcttctccatcgtgac 17841782  T
Q  205 acaattctccagattcttgattttaagttaactc 238  Q
    ||  |||||||||||| ||||||||| |||||||    
T  17841783 acgtttctccagattcctgattttaaattaactc 17841816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 2298421 - 2298528
Alignment:
Q  136 acgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaa 235  Q
    ||||||||||||||  |  ||||||||||||| ||||||| ||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||    
T  2298421 acgatttttccagtagcttcctcagaatcttgcttcaacagtcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaa 2298520  T
Q  236 ctctcaca 243  Q
    ||||||||    
T  2298521 ctctcaca 2298528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 35385879 - 35385963
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| || ||| |||||  |||||||||||||||||||||||    
T  35385879 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgatactctagatttctgattttaagttaactctcacaa 35385963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 25452229 - 25452143
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||| |||||||||| || ||||||||||||||| ||| |||||||| |||  | |||||||||||||||||||||||    
T  25452229 gaatcttgcttcatcaatcgtggcgcgatgcttctccatcgtggcacgattctccatatttctaattttaagttaactctcacaatt 25452143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 22672616 - 22672503
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||  |||||||| ||  ||||||||||||| ||||||||| ||||| |  ||||| ||||||||| ||| |||||||||| |  | |||||||    
T  22672616 gtggcacgaaatttccagtaactccctcagaatcttgcttcaacaattgtggcgcaatgcttttccatcgtggcacgattctccagaattctaattttaa 22672517  T
Q  231 gttaactctcacaa 244  Q
    ||||||||||||||    
T  22672516 gttaactctcacaa 22672503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 25445302 - 25445219
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||| |||||||||| || |||||||||||| ||  || ||||||||||||  | ||||||||||||||||||||    
T  25445302 gaatcttgcttcatcaatcgtggcgcgatgcttctccatcatggtacgattctccagatttctaattttaagttaactctcaca 25445219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 1170547 - 1170470
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaact 237  Q
    |||||||| |||| | || ||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||    
T  1170547 gaatcttgcttcagccattgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaact 1170470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 34477584 - 34477635
Alignment:
Q  195 ccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| ||| ||||| ||||  |||||||||||||||||||||||||||    
T  34477584 ccatcgtgccacgattctgcagaaacttgattttaagttaactctcacaatt 34477635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 21033759 - 21033518
Alignment:
Q  3 atcacctgatagaaggcttataattatagtggaaagtaaccatttnnnnnnnttgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcg 102  Q
    |||| |||||| |||||||||| ||||||||||||||||||  ||       | |||||||||||||||| |||||||||||| |||||||| |||||||    
T  21033759 atcatctgatacaaggcttatatttatagtggaaagtaaccccttaaaaaact-gaaacaaatcttcactgaaaatacgttttatttttatcttcaatcg 21033661  T
Q  103 tatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtg 202  Q
     | ||||||| |||| | ||||||||||||||||||||||||||||||||  | ||| || |||| ||||||||||||||||||||||||||||||||||    
T  21033660 caccatcgtggcacgattcgattcaattgtggcacgatttttccagtgactgcttcacaaacttgcttcaacaatcgtggcacgttgcttctccatcgtg 21033561  T
Q  203 acacaattctccagattcttgattttaagttaactctcacaat 245  Q
     ||| ||||||||| || | |||||||||||||||||||||||    
T  21033560 gcacgattctccagtttttagattttaagttaactctcacaat 21033518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 59 - 243
Target Start/End: Original strand, 23179907 - 23180091
Alignment:
Q  59 aacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctc 158  Q
    |||||||||||||| |||||||||||   || | ||||  | |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  23179907 aacaaatcttcactgaaaatacgtttcaattatttccttcagcgtaccatcgtgccacgttacgattcaatcgtgacacgatttttccagtgacgacctc 23180006  T
Q  159 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||||||||||||||| | ||||| ||||||||||||||  ||| ||||||||||||| ||||||||||||||||||||||    
T  23180007 agaatcttgtttcaacaatcatagcacgatgcttctccatcgtagcacgattctccagattcctgattttaagttaactctcaca 23180091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 3276090 - 3275949
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct-cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgac 204  Q
    |||||||||||||||| |||| || ||||||||||||||| ||||||  ||| |||||||||| ||||||||||||||||| |||||||||||||||| |    
T  3276090 catcgtgccacgttaccattccatcgtggcacgatttttcaagtgacttccttcagaatcttgcttcaacaatcgtggcacattgcttctccatcgtggc 3275991  T
Q  205 acaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||  |||||||||||  ||||||||||||||||||| |||||    
T  3275990 acgtttctccagatttctgattttaagttaactctcgcaatt 3275949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 22685018 - 22685197
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| |||| | |||||| || ||||||| |||||||||||||   |    
T  22685018 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacgattcgattcgatcgtggcacaatttttccagtgattgc 22685117  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaa 235  Q
      |||||| ||| ||||||||||||||||||  |||||| ||||||| ||| ||||| |||| |  ||||||||||||||    
T  22685118 tccagaattttggttcaacaatcgtggcacgaagcttcttcatcgtggcacgattcttcagaattctgattttaagttaa 22685197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 29555229 - 29555318
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||  ||| ||||||||||||  |||||||||||||||||||||||    
T  29555229 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtagcacgattctccagatttctgattttaagttaactctcacaa 29555318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 9021550 - 9021638
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||||||| ||||||||||||| | || ||||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  9021550 cctcagaatcttgcttcaacaatcgtgacgcgatgcttctccatcgtggcacgattctccagaattctgattttaagttaactctcaca 9021638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 4812935 - 4813021
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  4812935 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaatt 4813021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 25684379 - 25684293
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  25684379 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcacaatt 25684293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 590549 - 590463
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| ||||||||||||||| || |||||||  |||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  590549 gaatcttgcttcaacaatcgtggcgcgatgcttctttatcgtggcacgatactccagatttctgattttaagttaactctcacaatt 590463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 28332367 - 28332281
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||| | |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  28332367 gaatcttgcttcagccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcacaatt 28332281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 16757664 - 16757776
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||  |  ||   |||||||| |||||| |||||||| || ||| ||||||||||| ||| || |||||||||  |||||||||    
T  16757664 gtggcacgatttttccagtagcttcccaggaatcttgcttcaaccatcgtggcgcgatgcctctccatcgtggcacgatgctccagatttctgattttaa 16757763  T
Q  231 gttaactctcaca 243  Q
    |||||||||||||    
T  16757764 gttaactctcaca 16757776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 28327644 - 28327561
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||| | |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  28327644 gaatcttgcttcagccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcaca 28327561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 28895265 - 28895150
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||  |  ||   |||||||| ||||||||||||||| || ||||||| ||||||| ||| |||||||| | | || |||||||    
T  28895265 gtggcacgatttttccagtagcttcccaggaatcttgcttcaacaatcgtggcgcgatgcttctacatcgtggcacgattctccaaaatttttattttaa 28895166  T
Q  231 gttaactctcacaatt 246  Q
    ||||| ||||||||||    
T  28895165 gttaagtctcacaatt 28895150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 16752940 - 16753055
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||  |  ||   |||||||| |||||| |||||||| || ||| |||| |||||| ||| || |||||||||  |||||||||    
T  16752940 gtggcacgatttttccagtagcttcccaggaatcttgcttcaaccatcgtggcgcgatgcctctctatcgtggcacgatgctccagatttctgattttaa 16753039  T
Q  231 gttaactctcacaatt 246  Q
    ||||| ||||||||||    
T  16753040 gttaagtctcacaatt 16753055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 3 - 246
Target Start/End: Complemental strand, 4884763 - 4884528
Alignment:
Q  3 atcacctgatagaaggcttataattatagtggaaagtaaccatttnnnnnnnttgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcg 102  Q
    |||| |||||| |||||||||| ||||| |||||||||||| |||       |||||||||||||||||| |||||||||||||||||||||||||||||    
T  4884763 atcatctgatacaaggcttatatttataatggaaagtaaccctttaaaaaaattgaaacaaatcttcactgaaaatacgttttgtttttatcctcaatcg 4884664  T
Q  103 tatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtg 202  Q
    |        |||||||| | |||  || ||||||| ||||||||||||||  | | ||||||||| ||||||||||||| ||||||||||||||||||||    
T  4884663 t--------gccacgttgcaatttcatcgtggcacaatttttccagtgactgctttagaatcttgcttcaacaatcgtgacacgttgcttctccatcgtg 4884572  T
Q  203 acacaattctccagattcttgattttaagttaactctcacaatt 246  Q
     ||| ||||||||||||  |||||||||||||||||||||||||    
T  4884571 gcacgattctccagatttctgattttaagttaactctcacaatt 4884528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 4556352 - 4556586
Alignment:
Q  3 atcacctgatagaaggcttataattatagtggaaagtaaccatttnnnnnnnttgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcg 102  Q
    |||| |||||| |||||||||| ||||||||||||||||||  ||       | |||||||||||||||| |||||||||||| |||||||| |||||||    
T  4556352 atcatctgatacaaggcttatatttatagtggaaagtaaccccttaaaaaact-gaaacaaatcttcactgaaaatacgttttatttttatcttcaatcg 4556450  T
Q  103 tatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtg 202  Q
     | |||||||||||||| |||||  || |||||||||||||||| |      | |||||| ||| ||||||||||||||||| |||||||||||||||||    
T  4556451 caccatcgtgccacgttgcgatttcatcgtggcacgatttttcctg------cttcagaaacttatttcaacaatcgtggcatgttgcttctccatcgtg 4556544  T
Q  203 acacaattctccagattcttgattttaagttaactctcacaa 244  Q
     ||| ||||||||| ||   ||||||||||||||||||||||    
T  4556545 gcacgattctccagttttcagattttaagttaactctcacaa 4556586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 16689233 - 16689472
Alignment:
Q  3 atcacctgatagaaggcttataattatagtggaaagtaaccatttnnnnnnnttgaaacaaatcttcact-aaaaatacgttttgtttttatcctcaatc 101  Q
    |||| |||||| |||||||||| ||||||||||||||||||  ||       |||||||||||||||||| |||||||||||||  ||||||||||||||    
T  16689233 atcatctgatacaaggcttatatttatagtggaaagtaaccccttaaaaaa-ttgaaacaaatcttcactgaaaaatacgtttttattttatcctcaatc 16689331  T
Q  102 gtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgt 201  Q
    | | |||||||||||||| |||||  || ||||||||||||||||||||||  | ||| || |||| ||||||||||| || |||  |||||||||||||    
T  16689332 gcaccatcgtgccacgttgcgatttcatcgtggcacgatttttccagtgactgcttcaaaaacttgcttcaacaatcgcggaacg-agcttctccatcgt 16689430  T
Q  202 gacacaattctccagattcttgattttaagttaactctcaca 243  Q
    | ||| ||||||||| ||   |||||||||||||||||||||    
T  16689431 ggcacgattctccagttttcagattttaagttaactctcaca 16689472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 25699586 - 25699401
Alignment:
Q  59 aacaaatcttcactaaaaatacgttt-tgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct 157  Q
    |||||||||||||  ||||||||||| |||| || ||||  | |||| |||||||||||||||| |||| || ||| ||||| ||||||||||||   ||    
T  25699586 aacaaatcttcacagaaaatacgtttatgttatt-tccttcagcgtaccatcgtgccacgttacaattccatcgtgtcacgaattttccagtgacttgct 25699488  T
Q  158 -cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
     ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||| ||||||||||||||||||||||    
T  25699487 tcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggcacatttcttctgattcctgattttaagttaactctcaca 25699401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 56 - 244
Target Start/End: Complemental strand, 31300261 - 31300073
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacg-attcaattgtggcacgatttttccagtgacga 154  Q
    ||||||||||||||||| |||||||||||| |||||||| |||    |  ||||||||||||||||| ||||| | |||||||||  ||||||||  |      
T  31300261 tgaaacaaatcttcactgaaaatacgttttatttttatcttcagcaatgccatcgtgccacgttacggattca-tcgtggcacgaaatttccagtagctt 31300163  T
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    ||||||||||||| |||||||||||||||  | ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  31300162 cctcagaatcttgcttcaacaatcgtggcgtgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaa 31300073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 8631775 - 8631958
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| |||| | |||| ||||  |||||||||||||  |||||        
T  8631775 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacgattcgatccaatcttggcacgatttttttagtgattgt 8631874  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactct 239  Q
      |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  ||||||||||||||||||    
T  8631875 tccagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactct 8631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 47868382 - 47868195
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |  |||||| |||| |  ||| |||| |||||||||||||||||||||   |    
T  47868382 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcactatcgtggcacgattagatccaatcgtggcacgatttttccagtgattgc 47868283  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
      || ||| ||| ||||||||| ||| ||||  |||||| ||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  47868282 tccaaaattttgcttcaacaatggtgacacgaagcttcttcatcgtggcacgattctccagaattctgattttaagttaactctcaca 47868195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 8529030 - 8528918
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||  |  ||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||    |||||||||    
T  8529030 gtggcacgatttttccagtagcttcctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtgacacgattctccagaaatctgattttaa 8528931  T
Q  231 gttaactctcaca 243  Q
    |||||||||||||    
T  8528930 gttaactctcaca 8528918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 18586728 - 18586615
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    ||||||| |||||||||||  |  ||||||||||||| ||||||||||||||  || ||||||||||||||| ||| ||||||||||||  |||||||||    
T  18586728 gtggcacaatttttccagtagcttcctcagaatcttgcttcaacaatcgtggtgcgatgcttctccatcgtggcacgattctccagatttctgattttaa 18586629  T
Q  231 gttaactctcacaa 244  Q
    ||||||||||||||    
T  18586628 gttaactctcacaa 18586615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 16489089 - 16489001
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  16489089 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcaca 16489001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 15316718 - 15316627
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||||||||| ||||||||||||| | || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  15316718 cctcagaatcttgcttcaacaatcgtgacgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaatt 15316627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 7050664 - 7050803
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct-cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgac 204  Q
    |||||||||||||||| |||| |  ||||||||| ||||||| ||||   || | |  ||||||||||||||||||||||||||||||||| |||||| |    
T  7050664 catcgtgccacgttacaattccaccgtggcacgaattttccaatgacttgcttcggggtcttgtttcaacaatcgtggcacgttgcttctctatcgtggc 7050763  T
Q  205 acaattctccagattcttgattttaagttaactctcacaa 244  Q
    ||  |||||||||||| |||||||||| | ||||||||||    
T  7050764 acgtttctccagattcctgattttaagctgactctcacaa 7050803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 15312078 - 15311992
Alignment:
Q  159 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaat 245  Q
    ||||||||| ||||||||||||||  || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||||||||||    
T  15312078 agaatcttgcttcaacaatcgtggtgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaat 15311992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 4569843 - 4569751
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct-cagaatcttgtttcaacaatcgtggcacgttgcttctcca 197  Q
    ||||||||||||||||||||| ||  |||||||| ||||||||||||   || ||| ||||||||||||||||||||||||||||||||||||    
T  4569843 catcgtgccacgttacgattccatcatggcacgaattttccagtgacttgcttcaggatcttgtttcaacaatcgtggcacgttgcttctcca 4569751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 15830901 - 15830817
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactct 239  Q
    ||||||||||||| |||||||||||||||  | ||||||||||||||| ||| ||||||||||||  ||||||||||||||||||    
T  15830901 cctcagaatcttgcttcaacaatcgtggcgtgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactct 15830817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 40636956 - 40636868
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| |||||||| | |  ||||||||||||||||||||||    
T  40636956 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccaaaattctgattttaagttaactctcaca 40636868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 2485281 - 2485390
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||||   |  |||||| ||| ||||||||||||||||||  |||||||||||||| ||| ||||||| || || |||||||||    
T  2485281 gtggcacgatttttccagtgattgctccagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctcctgaatc-tgattttaa 2485379  T
Q  231 gttaactctca 241  Q
    |||||||||||    
T  2485380 gttaactctca 2485390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 11853285 - 11853202
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  11853285 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcaca 11853202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 6764739 - 6764654
Alignment:
Q  158 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||| ||| ||||||||||||||||||  |||||| ||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  6764739 cagaattttgcttcaacaatcgtggcacgaagcttctacatcgtggcacgattctccagaattctgattttaagttaactctcaca 6764654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 2485227 - 2485288
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacg 117  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| ||||    
T  2485227 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacg 2485288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 6764820 - 6764774
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcg 102  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||    
T  6764820 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcg 6764774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 7050578 - 7050641
Alignment:
Q  62 aaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgatt 125  Q
    ||||||||||||||||||||||||  || | ||||  | |||| ||||||||||||||||||||    
T  7050578 aaatcttcactaaaaatacgtttttgttatttccttcagcgtaccatcgtgccacgttacgatt 7050641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 16631142 - 16631068
Alignment:
Q  169 ttcaacaatcgtggcacgttgcttctccatcgtgacac-aattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||||||||||||||||||||  |||||| ||| | || ||||||  | ||||||||||||||||||||||    
T  16631142 ttcaacaatcgtggcacgttgcttctgaatcgtggcacgatttttccaga-acctgattttaagttaactctcaca 16631068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 3825064 - 3825116
Alignment:
Q  195 ccatcgtgacacaattctccagattcttgattttaagttaactctcacaattg 247  Q
    |||||||| ||| ||||| ||||  | ||||||||||||||||||||||||||    
T  3825064 ccatcgtgtcacgattctgcagaaacctgattttaagttaactctcacaattg 3825116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 26086240 - 26086292
Alignment:
Q  191 ttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||||||| ||| |||||| ||| |  ||||||||||||||||||||||    
T  26086240 ttctccatcgtggcacgattctctagaattctgattttaagttaactctcaca 26086292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 56 - 244
Target Start/End: Complemental strand, 26084912 - 26084724
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | |||||||||||| | ||||||||| |||||||||||||||||||||   |    
T  26084912 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtgccacgatgcgattcaatcgtggcacgatttttccagtgattgc 26084813  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
      |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  26084812 tccagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaa 26084724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 101 - 243
Target Start/End: Complemental strand, 26642971 - 26642829
Alignment:
Q  101 cgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcg 200  Q
    |||| ||||||||||||||||||||| || || ||||||  |||||||||||  | |||||||||||||||||||||||| ||||||| |||||||||||    
T  26642971 cgtaccatcgtgccacgttacgattccatcgttgcacgaagtttccagtgactgcttcagaatcttgtttcaacaatcgttgcacgttccttctccatcg 26642872  T
Q  201 tgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    || |||  |||||||||||| ||||||||||||||||||||||    
T  26642871 tggcacgtttctccagattcctgattttaagttaactctcaca 26642829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 101 - 243
Target Start/End: Complemental strand, 26748937 - 26748795
Alignment:
Q  101 cgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcg 200  Q
    |||| ||||||||||||||||||||| || || ||||||  |||||||||||  | |||||||||||||||||||||||| ||||||| |||||||||||    
T  26748937 cgtaccatcgtgccacgttacgattccatcgttgcacgaagtttccagtgactgcttcagaatcttgtttcaacaatcgttgcacgttccttctccatcg 26748838  T
Q  201 tgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    || |||  |||||||||||| ||||||||||||||||||||||    
T  26748837 tggcacgtttctccagattcctgattttaagttaactctcaca 26748795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 56 - 244
Target Start/End: Original strand, 22352199 - 22352387
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| | ||||||| |||| | |||| |||| ||||||| |||||||||||||   |    
T  22352199 tgaaacaaatcttcaataaaaatacgttttgtttttatcttcaatcgcaccatcgtggcacgattcgatccaatcgtggcacaatttttccagtgaatgc 22352298  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
      |||||| ||| ||||||||||||||||||  |||||||||| ||  ||| |||||| ||| | | ||||||||||||||||||||||    
T  22352299 tccagaattttgattcaacaatcgtggcacgaagcttctccattgtagcacgattctctagaatttagattttaagttaactctcacaa 22352387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 56 - 244
Target Start/End: Complemental strand, 26064943 - 26064755
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||  |||| |||||| |||| ||| ||||| ||||  |||||   |    
T  26064943 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtaacacgatacgatacaatcgtgacacgaattttaaagtgattgc 26064844  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
      |||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  26064843 tccagaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaa 26064755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 22343148 - 22343331
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||  ||| |  ||| |||| ||||||||||||||||| |||   |    
T  22343148 tgaaacaaatcttcaataaaaatacgttttgtttttatcttcaatcgcaccatcgtggtacgatttgatccaatcgtggcacgatttttccaatgaatgc 22343247  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactct 239  Q
      |||| | ||| ||||||||||||||||||  |||||||||||||| |   |||||||||| |  ||||||||||||||||||    
T  22343248 tccagagttttgcttcaacaatcgtggcacgaagcttctccatcgtggcttgattctccagaattctgattttaagttaactct 22343331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 28241674 - 28241860
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    |||||||||| |||| |||||||||||||| |||||||| ||||||| |  |||||| |||| | |||| |||| ||||||||||||||||||||    |    
T  28241674 tgaaacaaattttcaataaaaatacgttttatttttatcttcaatcgcactatcgtggcacgattcgatacaatcgtggcacgatttttccagtgtttgc 28241773  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    | |||||  ||| | ||||||||||||||||  |||||||||||||| ||| ||||| |||| |  ||||||||||||||||||||||    
T  28241774 c-cagaactttgctccaacaatcgtggcacgaagcttctccatcgtggcacgattcttcagaattctgattttaagttaactctcaca 28241860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 59 - 186
Target Start/End: Complemental strand, 33215662 - 33215535
Alignment:
Q  59 aacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctc 158  Q
    |||||||||||||| |||||||||||   ||||||||||||| ||| |||||||||||||| |||||  || ||||||||||||||||||||||  | ||    
T  33215662 aacaaatcttcactgaaaatacgtttctgttttatcctcaatggtaccatcgtgccacgttgcgatttcatcgtggcacgatttttccagtgactgcttc 33215563  T
Q  159 agaatcttgtttcaacaatcgtggcacg 186  Q
    ||||||||  ||||||||||||||||||    
T  33215562 agaatctttcttcaacaatcgtggcacg 33215535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 13467898 - 13468036
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct-cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgac 204  Q
    |||||||||||||||| |||| || ||||||||| ||||| ||||||   || | | |||||| ||||||||||||||||||||||||||||||||||      
T  13467898 catcgtgccacgttactattccatcgtggcacgaattttctagtgacttgcttctggatcttgcttcaacaatcgtggcacgttgcttctccatcgtggt 13467997  T
Q  205 acaattctccagattcttgattttaagttaactctcaca 243  Q
    |   ||||||| |||| ||||||||||||||||||||||    
T  13467998 atgtttctccaaattcctgattttaagttaactctcaca 13468036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 17695294 - 17695383
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  17695294 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaa 17695383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 1230683 - 1230769
Alignment:
Q  159 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaat 245  Q
    ||||| ||| ||||||||||||||||||  |||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||||    
T  1230683 agaattttgcttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaat 1230769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 13883211 - 13883125
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  13883211 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaatt 13883125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 31249160 - 31249246
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  31249160 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaatt 31249246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 35201772 - 35201858
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  35201772 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaatt 35201858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 25466347 - 25466431
Alignment:
Q  159 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||| ||  |||||| |||||  ||||||||||||||||||||||    
T  25466347 agaatcttgcttcaacaattgtggcacgatgcttctccatcgtggcatgattctctagatttctgattttaagttaactctcaca 25466431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 26887671 - 26887754
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  26887671 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcaca 26887754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 30975145 - 30975228
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  30975145 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcaca 30975228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 30981584 - 30981667
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  30981584 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcaca 30981667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 30987748 - 30987831
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  30987748 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcaca 30987831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 35209007 - 35209093
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| |||||||| || ||||||||||| ||| ||| || |||||||||  |||||||||||||||||||||||||    
T  35209007 gaatcttgcttcaaccatcgtggcgcgatgcttctccattgtggcacgatactccagatttctgattttaagttaactctcacaatt 35209093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 13878492 - 13878379
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||  |  ||   |||||||| |||||| |||||||| || |||||||||||| || ||| || |||||||||  |||||||||    
T  13878492 gtggcacgatttttccagtagcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttctccatcatggcacgatgctccagatttctgattttaa 13878393  T
Q  231 gttaactctcacaa 244  Q
    ||||||||||||||    
T  13878392 gttaactctcacaa 13878379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 25941400 - 25941330
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||    
T  25941400 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaa 25941330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 16785684 - 16785572
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    ||||||| |||||||||||| |  ||   |||||||| |||||| |||||||| || ||||| || |||||| ||| || |||||||||  |||||||||    
T  16785684 gtggcacaatttttccagtgtcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttttcgatcgtggcacgatgctccagatttctgattttaa 16785585  T
Q  231 gttaactctcaca 243  Q
    |||||||||||||    
T  16785584 gttaactctcaca 16785572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 15533146 - 15533223
Alignment:
Q  169 ttcaacaatcgtggcacgttgcttctccatcgtgacac-aattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||| ||||||||||||||||||||||||||| ||| | ||||  ||| || |||||||||||||||||||||||||    
T  15533146 ttcaaccatcgtggcacgttgcttctccatcgtggcacgatttctgtaga-tcctgattttaagttaactctcacaatt 15533223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 1230601 - 1230647
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcg 102  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||    
T  1230601 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcg 1230647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 33215534 - 33215497
Alignment:
Q  208 attctccagattcttgattttaagttaactctcacaat 245  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  33215534 attctccagatttctgattttaagttaactctcacaat 33215497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 17696061 - 17696025
Alignment:
Q  104 atcatcgtgccacgttacgattcaattgtggcacgat 140  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  17696061 atcatcgtgccacgttacgatccaatcgtggcacgat 17696025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 59 - 244
Target Start/End: Complemental strand, 38190834 - 38190648
Alignment:
Q  59 aacaaatcttcactaaaaatacgttt-tgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct 157  Q
    |||||||||||||| ||||||||||| |||| || ||||  | |||| ||||||||||||||||||||  || ||||||||| ||||||||||||   ||    
T  38190834 aacaaatcttcactgaaaatacgtttctgttatt-tccttcagcgtaccatcgtgccacgttacgattacatcgtggcacgaattttccagtgacttgct 38190736  T
Q  158 -cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
     ||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||| ||||||||| |||||||||||||    
T  38190735 tcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggcacgtttctccatattcctgattttaaattaactctcacaa 38190648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 59 - 244
Target Start/End: Original strand, 37171098 - 37171284
Alignment:
Q  59 aacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct- 157  Q
    |||||||||||||| ||||||||||||  || | ||||  | || | ||||||||||||||||||||| || ||||||||| |||| || ||||   ||     
T  37171098 aacaaatcttcactgaaaatacgtttttgttatttccttcagcgcaccatcgtgccacgttacgattccatcgtggcacgaatttttcaatgacttgctt 37171197  T
Q  158 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||||| | |||||||||||||||||||||    
T  37171198 caggatcttgtttcaacaatcatggcacgttgcttctccatcgtggcacgtttctccagattccttattttaagttaactctcacaa 37171284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 20050466 - 20050557
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||||    
T  20050466 cctcagaatcttgctgcaacaatcgtggcacgatgcttctccatcgtggcacgattctccagaattttgattttaagttaactctcacaatt 20050557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 30478754 - 30478663
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  30478754 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaatt 30478663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 22712943 - 22713029
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  22712943 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaatt 22713029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 27518063 - 27518152
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    ||||||||||||| ||||| ||||||||| || ||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||    
T  27518063 cctcagaatcttgcttcaaaaatcgtggcgcgatgcttctccatcgtggcacgattctccagaattttgattttaagttaactctcacaa 27518152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 12781663 - 12781751
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||| ||||||||  ||||||||||||||||||||||    
T  12781663 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattatccagatttctgattttaagttaactctcaca 12781751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 45280337 - 45280467
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| |||| | |||| |||| ||||||||||||||  |||||   |    
T  45280337 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacgattcgatccaatcgtggcacgatttttttagtgattgc 45280436  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacg 186  Q
      |||||| ||| ||||||||||||||||||    
T  45280437 tccagaattttgcttcaacaatcgtggcacg 45280467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 17943284 - 17943207
Alignment:
Q  169 ttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  17943284 ttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaatt 17943207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 35894683 - 35894771
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||   ||||||||||||| |  ||||||||||||||||||||||    
T  35894683 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtagtacaattctccagaattctgattttaagttaactctcaca 35894771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 2740678 - 2740591
Alignment:
Q  159 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  2740678 agaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaatt 2740591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 39686719 - 39686633
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  39686719 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcacaatt 39686633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 2735941 - 2735856
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaat 245  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||||    
T  2735941 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaat 2735856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 20055212 - 20055300
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||||||| ||||||||||||||  || ||||||||||||||| ||  |||||||||| |  ||||||||||||||||||||||    
T  20055212 cctcagaatcttgcttcaacaatcgtggtgcgatgcttctccatcgtggcatgattctccagaattctgattttaagttaactctcaca 20055300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 22717673 - 22717757
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| || || ||||||  |||||||||||||||||||||||    
T  22717673 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgatacttcagatttctgattttaagttaactctcacaa 22717757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 39679781 - 39679698
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  39679781 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcaca 39679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 33674824 - 33674936
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||  |  ||   |||||||  ||||||||||||||| || | ||||||||||||| ||| |||||| |||||  |||||||||    
T  33674824 gtggcacgatttttccagtagcttcccaggaatcttacttcaacaatcgtggcgcgatacttctccatcgtggcacgattctctagatttctgattttaa 33674923  T
Q  231 gttaactctcaca 243  Q
    |||||||||||||    
T  33674924 gttaactctcaca 33674936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 17462171 - 17462088
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||| | |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  17462171 gaatcttgcttcatccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcaca 17462088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 45567145 - 45567062
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||| ||||||    
T  45567145 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaacgctcaca 45567062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 5377785 - 5377846
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacg 117  Q
    ||||||||||||||| |||||||| ||||| |||||||| ||| ||| | ||||||| ||||    
T  5377785 tgaaacaaatcttcaataaaaataagttttatttttatcttcattcgcaccatcgtggcacg 5377846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 21521097 - 21521141
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtg 150  Q
    |||||||||||||| |||| | || ||||||||||||||||||||    
T  21521097 catcgtgccacgttgcgatcccatcgtggcacgatttttccagtg 21521141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 25133819 - 25133681
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctc-agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgac 204  Q
    ||||||||||||||| ||||| || ||||||||||||||||| ||||   ||  || |||||| ||||||||||||||||||||||||||||||||||||    
T  25133819 catcgtgccacgttatgattccatcgtggcacgatttttccaatgacttgctttaggatcttgcttcaacaatcgtggcacgttgcttctccatcgtgac 25133720  T
Q  205 acaattctccagattcttgattttaagttaactctcaca 243  Q
    ||  |||||||||||| ||||||||||||||||||||||    
T  25133719 acgtttctccagattcctgattttaagttaactctcaca 25133681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 2401585 - 2401727
Alignment:
Q  102 gtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgt 201  Q
    ||||||| |||||||||||| ||||||| |||||||||||||| ||||||||| |  ||||||||| |||||||||||||||     |||||||||||||    
T  2401585 gtatcattgtgccacgttacaattcaatcgtggcacgattttttcagtgacgatcatagaatcttgcttcaacaatcgtggcgaaaagcttctccatcgt 2401684  T
Q  202 gacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    | ||| ||||||||||||  |||||||||||||||||||||||    
T  2401685 ggcacgattctccagatttctgattttaagttaactctcacaa 2401727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 2393670 - 2393815
Alignment:
Q  101 cgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcg 200  Q
    |||| |||||||||||| ||||||||||  |||||||||||||| |||||| || |  ||||||||| |||||||||||||||  |  ||||||||||||    
T  2393670 cgtaccatcgtgccacgatacgattcaaccgtggcacgatttttacagtgatgatcatagaatcttgcttcaacaatcgtggcgtgaagcttctccatcg 2393769  T
Q  201 tgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    || ||| ||||||||||||  |||||||||||||||||||||||||    
T  2393770 tggcacgattctccagatttctgattttaagttaactctcacaatt 2393815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 21353769 - 21353857
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||| ||||    
T  21353769 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactcccaca 21353857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 9521450 - 9521367
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  9521450 gaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcaca 9521367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 13449902 - 13450032
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||||||||| ||||||||  | |||| | ||||||| |||| | |||| |||| |||||||||||||||||||||   |    
T  13449902 tgaaacaaatcttcaataaaaatacgttttatttttatctaccatcgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtgattgc 13450001  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacg 186  Q
      |||||| ||| ||||||||||||||||||    
T  13450002 tccagaattttgcttcaacaatcgtggcacg 13450032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 9526199 - 9526114
Alignment:
Q  161 aatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  9526199 aatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaactctcacaatt 9526114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 2617365 - 2617278
Alignment:
Q  158 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaat 245  Q
    |||||| ||| ||||||||||||||||||   ||||||||||||| ||| |||||||||| |  ||||||||||||||||||||||||    
T  2617365 cagaattttgcttcaacaatcgtggcacgaaacttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaat 2617278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 2232374 - 2232261
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||  |  ||   |||||||| |||||| |||||||| || ||||||||||||||| ||  || |||||||||  |||||||||    
T  2232374 gtggcacgatttttccagtagcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcatgatgctccagatttctgattttaa 2232275  T
Q  231 gttaactctcacaa 244  Q
    ||||||||||||||    
T  2232274 gttaactctcacaa 2232261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 23689313 - 23689384
Alignment:
Q  172 aacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||||||| || ||||||||||||||| ||  |||||| ||||| |||||||||||||||||||||||    
T  23689313 aacaatcgtggcgcgatgcttctccatcgtggcatgattctctagatttttgattttaagttaactctcaca 23689384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 2617445 - 2617384
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacg 117  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| | ||||||| ||||    
T  2617445 tgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcgcaccatcgtggcacg 2617384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 51749826 - 51749778
Alignment:
Q  195 ccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| ||| ||||| ||||  ||||||||||||||||||||||||    
T  51749826 ccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 44144300 - 44144438
Alignment:
Q  106 catcgtgccacgttacgattcaattgtggcacgatttttccagtgacgacct-cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgac 204  Q
    |||||||||||||||| |||| |||||||||||| ||||| ||||||   || ||| |||||||||||||||||||||||||||| |||||||||||| |    
T  44144300 catcgtgccacgttacaattccattgtggcacgaattttctagtgacttgcttcaggatcttgtttcaacaatcgtggcacgttgtttctccatcgtggc 44144399  T
Q  205 acaattctccagattcttgattttaagttaactctcaca 243  Q
    ||  ||||| |||||| ||||||||||||||||||||||    
T  44144400 acgtttctctagattcctgattttaagttaactctcaca 44144438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 56 - 241
Target Start/End: Complemental strand, 40946261 - 40946076
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    ||||||||||||||| |||||||| ||||| |||||||| ||||||| | ||||||| |||| | |||| |||| ||| |||||||||||||||||   |    
T  40946261 tgaaacaaatcttcaataaaaatatgttttatttttatcttcaatcgcaccatcgtggcacgattcgatccaatcgtgacacgatttttccagtgattgc 40946162  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctca 241  Q
      |||||| ||| ||||||||||||||||||  |||||| ||||||| ||| ||||| |||| |  ||||||||||||||||||||    
T  40946161 tccagaattttgcttcaacaatcgtggcacgaagcttcttcatcgtggcacgattcttcagaattctgattttaagttaactctca 40946076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 34547285 - 34547373
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  34547285 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtgacacgattctccagatttctgattttaagttaactctcaca 34547373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 44512969 - 44513057
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||| | |||||||||||||||||||||||    
T  44512969 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacaattctccagaattttgattttaagttaactctcaca 44513057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 7464941 - 7465032
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| |||||||||| |  |||||||||||||||||||||||||    
T  7464941 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagaattctgattttaagttaactctcacaatt 7465032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 30246730 - 30246639
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||||||||| ||||||||||||||| |  ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  30246730 cctcagaatcttgcttcaacaatcgtggcgcaatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaatt 30246639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 42006501 - 42006316
Alignment:
Q  59 aacaaatcttcactaaaaatacgttt-tgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgac-gacc 156  Q
    |||||||||||||| ||||||||||| |||| ||  | |||| |||| ||||||||||||||||||||| || ||| |||||||||| |||||||   |     
T  42006501 aacaaatcttcactgaaaatacgtttatgttatttccttcaa-cgtaccatcgtgccacgttacgattccatcgtgccacgattttttcagtgacttgct 42006403  T
Q  157 tcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacac-aattctccagattcttgattttaagttaactctcaca 243  Q
    |||| |||||||||||| |||||||||||||| |||||||| ||||| || | ||||||| |  | ||||||||||||||||||||||    
T  42006402 tcaggatcttgtttcaataatcgtggcacgttacttctccaacgtgagacgatttctcca-aaacctgattttaagttaactctcaca 42006316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 8378861 - 8378951
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaat 245  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||| ||| |||||||| |||  ||||||||||||||||||||||||    
T  8378861 cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccaaatttctgattttaagttaactctcacaat 8378951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 7074523 - 7074437
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| ||||||||||| ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  7074523 gaatcttgcttcaaccatcgtggcacgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaatt 7074437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 25405129 - 25405043
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  25405129 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcacaatt 25405043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 25351093 - 25351005
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||| |||||| | |||||||||||||||| ||||||||||||||| ||| |||||||| |||  ||||||||||||||||| ||||    
T  25351093 cctcaggatcttgctccaacaatcgtggcacgatgcttctccatcgtggcacgattctccaaatttctgattttaagttaactcccaca 25351005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 25356787 - 25356699
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||| |||||| | |||||||||||||||| ||||||||||||||| ||| |||||||| |||  ||||||||||||||||| ||||    
T  25356787 cctcaggatcttgctccaacaatcgtggcacgatgcttctccatcgtggcacgattctccaaatttctgattttaagttaactcccaca 25356699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 7069516 - 7069433
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||||||||||    
T  7069516 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatttctgattttaagttaactctcaca 7069433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 3320496 - 3320583
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaac-tctcacaatt 246  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||  ||||||||||||||| ||||||||||    
T  3320496 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaagttaacttctcacaatt 3320583  T

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Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 25409875 - 25409800
Alignment:
Q  171 caacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||| | ||||||    
T  25409875 caacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaacttttacaatt 25409800  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 3325244 - 3325321
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaact 237  Q
    |||||||| |||||| |||||||  || ||||||||||||||| ||| || || ||||||  ||||||||||||||||    
T  3325244 gaatcttgcttcaaccatcgtggtgcgatgcttctccatcgtggcacgatgcttcagatttctgattttaagttaact 3325321  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 48457586 - 48457525
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacg 117  Q
    ||||||||||||||| |||||||||||||| |||| ||| ||||||| | ||||||| ||||    
T  48457586 tgaaacaaatcttcaataaaaatacgttttattttaatcttcaatcgcaccatcgtggcacg 48457525  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 44144211 - 44144290
Alignment:
Q  59 aacaaatcttcactaaaaatacgttt-tgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacg 138  Q
    |||||||||||||| ||||||||||| |||| || ||||  | |||| ||||||||||||||||||||  || ||||||||    
T  44144211 aacaaatcttcactgaaaatacgtttatgttatt-tccttgagcgtaccatcgtgccacgttacgattacatcgtggcacg 44144290  T

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Target: scaffold0038 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 41836 - 42022
Alignment:
Q  56 tgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcgtatcatcgtgccacgttacgattcaattgtggcacgatttttccagtgacgac 155  Q
    |||||||||| |||| |||||||||||||| |||||||| ||||||| |  |||||| |||| | |||| |||| ||||||||||||||||||||    |    
T  41836 tgaaacaaattttcaataaaaatacgttttatttttatcttcaatcgcactatcgtggcacgattcgatacaatcgtggcacgatttttccagtgtttgc 41935  T
Q  156 ctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    | |||||  ||| | ||||||||||||||||  |||||||||||||| ||| ||||| |||| |  ||||||||||||||||||||||    
T  41936 c-cagaactttgctccaacaatcgtggcacgaagcttctccatcgtggcacgattcttcagaattctgattttaagttaactctcaca 42022  T

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Target: scaffold1764 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 1192 - 1105
Alignment:
Q  159 agaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaatt 246  Q
    ||||||||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  1192 agaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcacaatt 1105  T

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Target: scaffold0256 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 16055 - 15976
Alignment:
Q  164 cttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  16055 cttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccagatttctgattttaagttaactctcaca 15976  T

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Target: scaffold0209 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 17413 - 17497
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcacaa 244  Q
    |||||||| ||||||||||||||| || |||||||| |||||| ||| || |||||||||  |||||||||||||||||||||||    
T  17413 gaatcttgcttcaacaatcgtggcgcgatgcttctctatcgtggcacgatactccagatttctgattttaagttaactctcacaa 17497  T

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Target: scaffold0004 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 188665 - 188753
Alignment:
Q  155 cctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    ||||| ||||||| ||||||||||||||| || ||||||||||||||  ||| ||||||||||||  | ||||||||||||||||||||    
T  188665 cctcataatcttgcttcaacaatcgtggcgcgatgcttctccatcgtagcacgattctccagatttctaattttaagttaactctcaca 188753  T

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Target: scaffold0552 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 1264 - 1349
Alignment:
Q  158 cagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaagttaactctcaca 243  Q
    |||||| ||| ||||||||||||||||||  |||||| ||||||| ||| |||||||||| |  ||||||||||||||||||||||    
T  1264 cagaattttgcttcaacaatcgtggcacgaagcttctacatcgtggcacgattctccagaattctgattttaagttaactctcaca 1349  T

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Target: scaffold0552; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 1182 - 1229
Alignment:
Q  55 ttgaaacaaatcttcactaaaaatacgttttgtttttatcctcaatcg 102  Q
    |||||||||||||||| |||||||||||||| |||||||| |||||||    
T  1182 ttgaaacaaatcttcaataaaaatacgttttatttttatcttcaatcg 1229  T

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Target: scaffold0131 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 30905 - 30795
Alignment:
Q  131 gtggcacgatttttccagtgacgacctcagaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagattcttgattttaa 230  Q
    |||||||||||||||||||  |  ||   |||||||| |||||| ||| |||| || ||||||||||||||| ||| || |||||||||  |||||||||    
T  30905 gtggcacgatttttccagtagcttcccaggaatcttgcttcaaccatcctggcgcgatgcttctccatcgtggcacgatgctccagatttctgattttaa 30806  T
Q  231 gttaactctca 241  Q
    |||||||||||    
T  30805 gttaactctca 30795  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 224576 - 224517
Alignment:
Q  160 gaatcttgtttcaacaatcgtggcacgttgcttctccatcgtgacacaattctccagatt 219  Q
    |||||||| |||||| |||||||| || ||||||||||||||| ||| || |||||||||    
T  224576 gaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactccagatt 224517  T

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Target: scaffold0250 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 2698 - 2626
Alignment:
Q  174 caatcgtggcacgttgcttctccatcgtgacacaattc-tccagattcttgattttaagttaactctcacaatt 246  Q
    |||||||| |||||||| |  | |||||| |||||||| | ||||| |||||||||||||||||||||||||||    
T  2698 caatcgtgccacgttgcctagcaatcgtgtcacaattcctgcagat-cttgattttaagttaactctcacaatt 2626  T

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