View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_50 (Length: 326)
Name: NF5400_high_50
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 41180390 - 41180699
Alignment:
| Q |
18 |
ttttcgatctaactttatccgtatatcaaagtttaatattcttaagtgtttaattttgtttcccta----------agttactttctagtagacacatca |
107 |
Q |
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| T |
41180390 |
ttttcgatctaactttatccatatatcaaagtttaatgctct-aactgtttaattttgtttccctttcatccacccagttactttctagtagacacatca |
41180488 |
T |
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| Q |
108 |
aatcagtcattctcctaatcaaagcgtctactattttcatagatttttctgtaagagtgcttat--tctttatactcttgtgaactaacttctttcccac |
205 |
Q |
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| T |
41180489 |
aatcagtcattctcctaatcaaagcgtctactatcttcatagatttttctgtaagagcgcttatattctttatactcttgtgaactaacttctttcccac |
41180588 |
T |
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| Q |
206 |
atggaattccttggaagatgagagtcagatggctcaactgcatgaagttttgctctagtattgactgctcctgcttgcatattctgagggaaggcaatca |
305 |
Q |
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| T |
41180589 |
atgaaattccttggaagatgagagccagatggctcaattgcatgaagttttgctctagtattgactgctcatgcttgcatattctgagggaagataatca |
41180688 |
T |
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| Q |
306 |
agttgatgatg |
316 |
Q |
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| T |
41180689 |
agttgatgatg |
41180699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 12180036 - 12180084
Alignment:
| Q |
213 |
tccttggaagatgagagtcagatggctcaactgcatgaagttttgctct |
261 |
Q |
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| T |
12180036 |
tccttggaagatgagagccagatggttcaattgcttaaagttttgctct |
12180084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 12181612 - 12181660
Alignment:
| Q |
213 |
tccttggaagatgagagtcagatggctcaactgcatgaagttttgctct |
261 |
Q |
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| T |
12181612 |
tccttggaagatgagagccagatggttcaattgcttaaagttttgctct |
12181660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 14232576 - 14232624
Alignment:
| Q |
213 |
tccttggaagatgagagtcagatggctcaactgcatgaagttttgctct |
261 |
Q |
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||||||||||||||||| ||||||| |||| ||| | |||||||||||| |
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| T |
14232576 |
tccttggaagatgagagccagatggttcaattgcttaaagttttgctct |
14232624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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