View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_52 (Length: 316)
Name: NF5400_high_52
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 40483698 - 40483412
Alignment:
| Q |
19 |
aattgttctctaaaaaacagatggttaattttttattcacccacttcctgatatgcccctatgtatgcagtttcaatttagattatcttgggggtgatga |
118 |
Q |
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| T |
40483698 |
aattgttctctaaaaaacagatggttaattttttattcacccacttccttatatgcccctatgtatgcagtttcaatttagattatcttgggggtgatga |
40483599 |
T |
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| Q |
119 |
cattgcatttcatagccttacctattaaataatcatatcaattttaagtttgagctccttctacgaaatataacaatttttgttgccttgtggtatttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40483598 |
cattgcatttcatagccttacctattaaataatcatatcaattttaagtttgagctccttctacgaaatataacaatttttgttgccttg-ggtatttta |
40483500 |
T |
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| Q |
219 |
tcagatgatacgtaatgaatactttccaagttctaatatatattttgtaaaatcacagttgtcgttttgctactatcgttttcctatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40483499 |
tcagatgatacgtaatgaatactttccaagttctaatatatattttgtaagatcacagttgtcgttttgctactatcgttttcctatg |
40483412 |
T |
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