View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_high_58 (Length: 292)
Name: NF5400_high_58
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_58 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 43006503 - 43006227
Alignment:
| Q |
1 |
agtaatatgttttccatgaggaacagttatgtcgacaagagaaggcaaagctttcaatatcttttttatttgtaacacaatcttgtatgcatacctaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43006503 |
agtaatatgttttccatgaggaacagttatgtcgacaagagaaggcaaagctttcaatatcttttttatttgcaacacaatcttgtatgcatacctaaaa |
43006404 |
T |
|
| Q |
101 |
caatgaaccaagataaatgtgaatacatttcaataacacttcaagaaagtacaaataggtatac---nnnnnnnnntcttattccttcagtaccgtctat |
197 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43006403 |
caatgaaccaggataaatgtgaatacatttcaataacacttcaagaaagtacaaataggtatacaaaaaaaaaaaatcttattccttcagtaccgtctat |
43006304 |
T |
|
| Q |
198 |
gcaagcacttcggattcttgaaatcatccatcattttctttacgaaatccaaagtaatagtttcatcttctattcta |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43006303 |
gcaagcacttcggattcttgaaatcatccatcattttctttacgaaatccaaagtaatagtttcatcttctattcta |
43006227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 42998164 - 42997905
Alignment:
| Q |
1 |
agtaatatgttttccatgaggaacagttatgtcgacaagagaaggcaaagctttcaatatcttttttatttgtaacacaatcttgtatgcatacctaaaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| ||||||| |||||||||||||| |
|
|
| T |
42998164 |
agtaacatgttttccatgaggaacagttatgtcgacaagagaaggcaaagctttcaaaatcttttttgtttgcaacaaaatcttggatgcatacctaaaa |
42998065 |
T |
|
| Q |
101 |
caatgaaccaagataaatgtgaatacatttcaataacacttcaag-aaagtacaaataggtatac-nnnnnnnnntcttattccttcagtaccgtctatg |
198 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||||||||||||| |||||||||| || | || ||| || ||||| |||| ||||| |
|
|
| T |
42998064 |
caattaaccaggacaaatgcaaatacatttcaataacacttcaagaaaagtacaaacagtttcacaaaaaaagattctcatcacttcaataccctctatc |
42997965 |
T |
|
| Q |
199 |
caagcacttcggattcttgaaatcatccatcattttctttacgaaatccaaagtaatagt |
258 |
Q |
| |
|
|||| ||||| | | ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42997964 |
caagtacttctgttccttgaaatcattcatcattttctttacgaaatccaaagtaatagt |
42997905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 19315181 - 19314914
Alignment:
| Q |
1 |
agtaatatgttttccatgaggaacagttatgtcgacaagagaaggcaaagctttcaatatcttttttatttgtaacacaatcttgtatgcatacctaaaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||| |||| |||||||||| | |||||||||||||| |
|
|
| T |
19315181 |
agtaaaatgttttccatgaggaacagttatgtcgacaagagaaggtaaagcttgcaacatctcttttgtttgcaacacaatctggaatgcatacctaaaa |
19315082 |
T |
|
| Q |
101 |
caatgaaccaagataaatgtgaatacatttcaataacacttcaagaaagtacaaataggtatacnnnnnnnnntcttattccttcagtaccgtctatgca |
200 |
Q |
| |
|
|||||||||| || ||||| |||||| ||||||||||||||||||||||||||| || ||||| || ||| ||||||||||| |||||| |
|
|
| T |
19315081 |
caatgaaccaggacaaatgcaaatacacttcaataacacttcaagaaagtacaaacagttatacagaaaa-----ttcttcgttcagtaccgtttatgca |
19314987 |
T |
|
| Q |
201 |
agcacttcggattcttgaaatcatccatcattttctttacgaaatccaaagtaatagtttcatcttctattct |
273 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
19314986 |
agcacttctgtttcttgaaatcatccatcattttctttacaaaatccaaagtaatagtatccccttctattct |
19314914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University