View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_63 (Length: 280)
Name: NF5400_high_63
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_63 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 44179969 - 44180200
Alignment:
| Q |
16 |
attggagttccgatgtcgcttgctacgtaacttaaaatagtgttttcattcgtcaatattcttaggaaagagtcatgattctaatccaaaattgcacatg |
115 |
Q |
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| T |
44179969 |
attggagttccgatgtcgcttgctacataacttaaaatagtgttttcattcgtcaatattctcagggaagagtcatgattctaattcaaaattgcacatg |
44180068 |
T |
|
| Q |
116 |
tatcgcccnnnnnnnn--gttacacata-----ccctttgattttattgttgggattaaaatcatttgtccactaagatatacatataatatcatacctg |
208 |
Q |
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|||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44180069 |
tatcaccctttttttttggttacacatatatcgccctttgattttattgttgggattaaaatcatttgtccactaagatatacatataatatcatacctg |
44180168 |
T |
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| Q |
209 |
agctttcaacctcctacaagtaccattttctt |
240 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44180169 |
agctttcaacctcctacaagtaccattttctt |
44180200 |
T |
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