View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_high_67 (Length: 264)

Name: NF5400_high_67

Description: NF5400

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5400_high_67

[»] chr4 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 235; E-Value: 1e-130

Query Start/End: Original strand, 16 - 250

Target Start/End: Complemental strand, 30767909 - 30767675

Alignment:

Q	16	caaaaccaaaccttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaact	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30767909	caaaaccaaaccttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaact	30767810	T

Q	116	cacagtcatttctaggccaaggttccggttcagaatactctccaaacgagacccttcagtcaaatttttcgcattctgttagaacatggaatgagattcc	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30767809	cacagtcatttctaggccaaggttccggttcagaatactctccaaacgagacccttcagtcaaatttttcgcattctgttagaacatggaatgagattcc	30767710	T

Q	216	tatggattcttcttcagaggttcatcatcacaggt	250	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30767709	tatggattcttcttcagaggttcatcatcacaggt	30767675	T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 66; E-Value: 3e-29

Query Start/End: Original strand, 16 - 140

Target Start/End: Complemental strand, 5053594 - 5053472

Alignment:

Q	16	caaaaccaaaccttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatataaagaaagttggattcatggtaaact	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5053594	caaaaccaaaccccttttgagagccaatataagagaattgtgaaatggagcagtgaaacaaccactgattatataaagaaagttggattcatggtaaact	5053495	T

Q	116	cacagtcatttctaggccaaggttc	140	Q
		\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	5053494	--cggtcatttctaggtcaaggttc	5053472	T

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