View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_69 (Length: 257)
Name: NF5400_high_69
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_69 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4712714 - 4712477
Alignment:
| Q |
1 |
ccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712714 |
ccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaac |
4712615 |
T |
|
| Q |
101 |
cttcattatttatcttccaatgactttctttcatttcaaattgagattcaaatcttcttcttctaagaaaaactattactcccattataaatgctagcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712614 |
cttcattatttatcttccaatgactttctttcatttcaaattgagattcaaatcttcttcttctaagaaaaactattactcccattataaatgctagcaa |
4712515 |
T |
|
| Q |
201 |
gagacatgataatccaaccaaagcaaacatgactatgg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4712514 |
gagacatgataatccaaccaaagcaaacatgactatgg |
4712477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 4697838 - 4697678
Alignment:
| Q |
1 |
ccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaac |
100 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| | || |||||||||||||||||| |||| |||| |
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| T |
4697838 |
ccaactccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaac |
4697739 |
T |
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| Q |
101 |
cttcattatttatcttccaatgactttctttcatttcaaattgagattcaaatcttcttct |
161 |
Q |
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| T |
4697738 |
cttcttttcttgtcctccatgaactttcttccatttcaatatgagattcaagtcttcttct |
4697678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 4784483 - 4784346
Alignment:
| Q |
1 |
ccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||| | || |||||||||||||||||| |||| |||| |
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| T |
4784483 |
ccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaac |
4784384 |
T |
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| Q |
101 |
cttcattatttatcttccaatgactttctttcatttca |
138 |
Q |
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||| || ||| ||||||| |||||||| ||||||| |
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| T |
4784383 |
cttgtttctttgtcttccatgaactttcttccatttca |
4784346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4816912 - 4816810
Alignment:
| Q |
1 |
ccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||| | || |||||||||||||||||| |||| |||| |
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| T |
4816912 |
ccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaac |
4816813 |
T |
|
| Q |
101 |
ctt |
103 |
Q |
| |
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||| |
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| T |
4816812 |
ctt |
4816810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 4846660 - 4846506
Alignment:
| Q |
10 |
atgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattat |
109 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||| | || ||||||||||| |||||| |||| |||||||| || | |
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| T |
4846660 |
atgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggcacaaatgggacggtaaagttgaggaaccttctttgt |
4846561 |
T |
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| Q |
110 |
ttatcttccaatgactttctttcatttcaaattgagattcaaatcttcttcttct |
164 |
Q |
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|| ||||||| |||||||| ||||| || | ||||||||||||||||||||| |
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| T |
4846560 |
ttgtcttccatgaactttcttccatttgaagattagattcaaatcttcttcttct |
4846506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4863357 - 4863446
Alignment:
| Q |
1 |
ccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaa |
90 |
Q |
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||||| || ||||| |||||||| || |||||||||||||| |||||||| || ||| |||||| | || |||||||||||||||||| |
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| T |
4863357 |
ccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggcacaaatgggatggtaaa |
4863446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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