View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5400_high_7 (Length: 645)
Name: NF5400_high_7
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 274 - 630
Target Start/End: Original strand, 2666222 - 2666566
Alignment:
| Q |
274 |
tgagataaccataagaggaaagattctagcgagtaaacctgctaattcaatttgaaaaagaataata--tacccacgaccaaagttacaaagctggtgaa |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
2666222 |
tgagataaccataagaggaaagattctagcgagtaaacctgctatttcaatttgaaaaagaaaaatggcttcccacgaccaaagttacaaagctggtgaa |
2666321 |
T |
|
| Q |
372 |
accatgggcagaactgaggtacaataaatatcattcacaatttctatctgtatatttttcattcattcaacctaattcttccattttcttgctcaagatt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
2666322 |
accatgggcagaactgaggtacaataaatatcattcacaatttctatctctatatttttcattcactcaacctaattcttccatttttttgctcaagatt |
2666421 |
T |
|
| Q |
472 |
tatcatcttttgaggggaagatttatcatcttgaatgtaaatgatacatgttacacaatattttttgttaatataaataacagctttttgtgggataaaa |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2666422 |
tatcatcttttgaggggaagatttatcatcttgaatg--------------tacacaatattttttgttaatatacataacagctttttgtgggataaaa |
2666507 |
T |
|
| Q |
572 |
atcttatgtcttggtaagtgttcagcaaaataagtactagaaaactgctaccaacatat |
630 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2666508 |
atcttatgtcttagtaagtattcagcaaaataagtactagaaaactgctaccaacatat |
2666566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2665948 - 2666181
Alignment:
| Q |
1 |
tatctttgaatatcattatactatcacaaaataaaaatggatatcgatctcttcatcatataataatcaagtaattgctacttgtcaaaactccacaggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2665948 |
tatctttgaatatcattatactatcacaaaataaaaatggatatcgatctcttcatcatataataatcaagtaattgcaacttgtcaaaactccacaggc |
2666047 |
T |
|
| Q |
101 |
tgattcctcatcttaaactataaaggcactcaagtttgtaaccatcatcttagggcaacacgtgttgtaaacgtgtcaagaagttgaatacgtggttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2666048 |
tgattcctcatcttaaactataaaggcactcaagtttgtaaccatcatcttagggcaacacgtgttgtaaacgtgtcaagaagttgaatacgtggttatc |
2666147 |
T |
|
| Q |
201 |
atacatgactcatgaaatactataaatagaacat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2666148 |
atacatgactcatgaaatactataaatagaacat |
2666181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 2675185 - 2675256
Alignment:
| Q |
158 |
acacgtgttgtaaacgtgtcaagaagttgaatacgtggttatcatacatgactcatgaaatactataaatag |
229 |
Q |
| |
|
|||| |||||| ||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
2675185 |
acacatgttgtgcacgtgtcaagaagttagacacgtggttatcatacacgactcatgaaacactataaatag |
2675256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 2681501 - 2681571
Alignment:
| Q |
158 |
acacgtgttgtaaacgtgtcaagaagttgaatacgtggttatcatacatgactcatgaaatactataaata |
228 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||||||||||||||| || |||||| |||||||||| |
|
|
| T |
2681501 |
acacgtgttgtggacgtgtcaagaagttggacacgtggttatcatacactacctatgaaacactataaata |
2681571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 2681715 - 2681769
Alignment:
| Q |
357 |
tacaaagctggtgaaaccatgggcagaactgaggtacaa-taaatatcattcaca |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
2681715 |
tacaaagctggtgaaaccatgggccgaactgaggtataacaaaatatcattcaca |
2681769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 2675084 - 2675145
Alignment:
| Q |
58 |
atataataatcaagtaattgctacttgtcaaaactccacaggctgattcctcatcttaaact |
119 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||| || ||||| || || ||||||||||||| |
|
|
| T |
2675084 |
atataatactcaagtaatggcaacttgtcaaaattctacaggttggtttctcatcttaaact |
2675145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University