View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_high_71 (Length: 255)

Name: NF5400_high_71
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_high_71
NF5400_high_71
[»] chr1 (2 HSPs)
chr1 (1-245)||(5906012-5906256)
chr1 (1-245)||(5902528-5902772)
[»] chr8 (10 HSPs)
chr8 (1-245)||(1963355-1963596)
chr8 (1-245)||(2014833-2015074)
chr8 (3-245)||(2436757-2437008)
chr8 (1-245)||(2018216-2018457)
chr8 (50-244)||(2007814-2008008)
chr8 (3-210)||(2011463-2011673)
chr8 (3-245)||(1965021-1965266)
chr8 (95-245)||(1969058-1969208)
chr8 (50-245)||(2004433-2004628)
chr8 (89-209)||(906020-906140)
[»] scaffold0184 (1 HSPs)
scaffold0184 (139-215)||(15200-15276)
[»] scaffold0078 (2 HSPs)
scaffold0078 (139-215)||(57568-57644)
scaffold0078 (138-214)||(3024-3100)
[»] chr7 (2 HSPs)
chr7 (138-214)||(16566680-16566756)
chr7 (138-214)||(16598906-16598982)
[»] scaffold0891 (1 HSPs)
scaffold0891 (176-214)||(3429-3467)
[»] chr3 (2 HSPs)
chr3 (176-214)||(35848405-35848443)
chr3 (176-214)||(35866076-35866114)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5906012 - 5906256
Alignment:
Q  1 ataaattcttatgggttgtaagagcaccaagtagttcagccagtggtgcatatctttcagcacaaaacgatgttgatctttcgcagtttttaccatctgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5906012 ataaattcttatgggttgtaagagcaccaagtagttcagcatgtggtgcatatctttcagcacaaaacgatgttgatctttcgcaggttttaccatctgg 5906111  T
Q  101 gttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5906112 gttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcat 5906211  T
Q  201 tgtggttggaattcaatccttgagagcgcgatgcatggtgtgcca 245  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  5906212 tgtggttggagttcaatccttgagagcgcgatgcatggtgtgcca 5906256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5902528 - 5902772
Alignment:
Q  1 ataaattcttatgggttgtaagagcaccaagtagttcagccagtggtgcatatctttcagcacaaaacgatgttgatctttcgcagtttttaccatctgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||    
T  5902528 ataaattcttatgggttgtaagagcaccaagtagttcagccagtggtgcatatctttcagcagaaaatgatgttgatcttttgcagtttttaccacctgg 5902627  T
Q  101 gttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcat 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||     
T  5902628 gttcttggagagaaccaaggagcaagggatggttattccatcatgggcacctcagattgaaacacttagtcacagatcagttggtggattcttgagtcac 5902727  T
Q  201 tgtggttggaattcaatccttgagagcgcgatgcatggtgtgcca 245  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||    
T  5902728 tgtggctggaattcaatccttgagagtgtgatgcatggtgtgcca 5902772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1963355 - 1963596
Alignment:
Q  1 ataaattcttatgggttgtaagagcaccaagtagttcagccagtggtgcatatctttcagcacaaaacgatgttgatctttcgcagtttttaccatctgg 100  Q
    ||||||||||||||||||||||||| ||||||||| |||| | || ||||||||||||||||      |||||||||| ||  |||||||||||||||||    
T  1963355 ataaattcttatgggttgtaagagctccaagtagtacagcaaatgctgcatatctttcagcatct---gatgttgatcctttacagtttttaccatctgg 1963451  T
Q  101 gttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcat 200  Q
    ||| ||||||||||||||||| ||||| |||||| |||||||||||||||| |||||| |||||||||||||||  ||  ||||||| || |||  ||||    
T  1963452 gtttttggagagaaccaaggaacaagggatggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcat 1963551  T
Q  201 tgtggttggaattcaatccttgagagcgcgatgcatggtgtgcca 245  Q
    |||||||||||||||| ||||||||| | | || |||||||||||    
T  1963552 tgtggttggaattcaacccttgagagtgtggtgtatggtgtgcca 1963596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2015074 - 2014833
Alignment:
Q  1 ataaattcttatgggttgtaagagcaccaagtagttcagccagtggtgcatatctttcagcacaaaacgatgttgatctttcgcagtttttaccatctgg 100  Q
    ||||||||||||||||||||||| ||||||||| | |||||| || ||||||||||||||||      |||||||| | ||  || |||||||| || ||    
T  2015074 ataaattcttatgggttgtaagatcaccaagtaatacagccaatgctgcatatctttcagcatct---gatgttgaccctttacaatttttaccttcagg 2014978  T
Q  101 gttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcat 200  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||| |||||||| ||||||  ||||||||||| ||||||| |||     
T  2014977 gttcttggagagaacaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcac 2014878  T
Q  201 tgtggttggaattcaatccttgagagcgcgatgcatggtgtgcca 245  Q
    ||||||||||||||||| |||||||| | | ||||||||||||||    
T  2014877 tgtggttggaattcaatgcttgagagtgtgttgcatggtgtgcca 2014833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 2436757 - 2437008
Alignment:
Q  3 aaattcttatgggttgtaagagcaccaa---gtagttcagccagtggtgcata----tc--tttcagcacaaaacgatgttgatctttcgcagtttttac 93  Q
    ||||||||||||||||||||||||||||   |||||||| | ||||  |||||    ||  ||||||||||||| |||||||| | || ||| |||||||    
T  2436757 aaattcttatgggttgtaagagcaccaaatagtagttcatctagtgcagcatacttttcagtttcagcacaaaatgatgttgaccctttgcaatttttac 2436856  T
Q  94 catctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattctt 193  Q
    ||| ||||||| | |||||||||||||| ||||| ||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||| |||||    
T  2436857 catgtgggttcatagagagaaccaaggatcaagggatggttattccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttctt 2436956  T
Q  194 gagtcattgtggttggaattcaatccttgagagcgcgatgcatggtgtgcca 245  Q
    |||||| ||||| |||||||||| ||||||||| | | ||||||||||||||    
T  2436957 gagtcactgtggctggaattcaacccttgagagtgtggtgcatggtgtgcca 2437008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2018457 - 2018216
Alignment:
Q  1 ataaattcttatgggttgtaagagcaccaagtagttcagccagtggtgcatatctttcagcacaaaacgatgttgatctttcgcagtttttaccatctgg 100  Q
    ||||||||||||||||||||||| ||||||||| | |||||| || ||||||||||||||||      |||||||| | ||  || |||||||| || ||    
T  2018457 ataaattcttatgggttgtaagatcaccaagtaatacagccaatgctgcatatctttcagcatct---gatgttgaccctttacaatttttaccttcagg 2018361  T
Q  101 gttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcat 200  Q
    ||||||||||||||  ||||| ||||| ||||||||||||||||||||||| |||||| |||||||| ||||||  ||||||||||| ||||||| |||     
T  2018360 gttcttggagagaaaaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcac 2018261  T
Q  201 tgtggttggaattcaatccttgagagcgcgatgcatggtgtgcca 245  Q
    ||||||||||||||||  |||||||| | | ||||||||||||||    
T  2018260 tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgcca 2018216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 2008008 - 2007814
Alignment:
Q  50 atatctttcagcacaaaacgatgttgatctttcgcagtttttaccatctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggca 149  Q
    ||||||||||||| |||| ||| ||||   || |||||||||||||||||||||||||||||||||||||||| ||||  | |||||| ||||||||||     
T  2008008 atatctttcagcagaaaatgatattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcg 2007909  T
Q  150 cctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggaattcaatccttgagagcgcgatgcatggtgtgcc 244  Q
    || |||||| ||||||| |||||||  ||||||||||| |||||||  |||||||| |||||||||| ||||||||| | | |||| ||||||||    
T  2007908 ccgcagattcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgcc 2007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 2011673 - 2011463
Alignment:
Q  3 aaattcttatgggttgtaagagcaccaagtagt---tcagccagtggtgcatatctttcagcacaaaacgatgttgatctttcgcagtttttaccatctg 99  Q
    |||||| ||||||||||  ||||||||||||||   ||| | | ||  |||||||||||||||||||| |||||||||  ||  || |||||||||||||    
T  2011673 aaattcctatgggttgtgcgagcaccaagtagtagttcatctaatgcagcatatctttcagcacaaaatgatgttgatgctttacaatttttaccatctg 2011574  T
Q  100 ggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtca 199  Q
    |||| |||||||||||||| ||| ||||  | || ||| |||||||||||||||||||| ||||||||||||| |  |||||||| || |||||||||||    
T  2011573 ggtttttggagagaaccaaagaggaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcagttggcgggttcttgagtca 2011474  T
Q  200 ttgtggttgga 210  Q
     ||||||||||    
T  2011473 ctgtggttgga 2011463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 1965021 - 1965266
Alignment:
Q  3 aaattcttatgggttgtaagagcaccaagtagt---tcagccagtggtgcatatctttcagcacaaaacgatgttgatctttcgcagtttttaccatctg 99  Q
    |||||| ||||||||||  ||||||||||||||   ||| | ||||  |||||||||||||||||||| || | ||| | || | | |||||||||||||    
T  1965021 aaattcctatgggttgtgtgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctg 1965120  T
Q  100 ggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtca 199  Q
    |||| ||||||||||| |||||| ||||  | || ||| |||||||||||||||||||| ||||||||||||| |  ||| |||| || |||||||||||    
T  1965121 ggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtca 1965220  T
Q  200 ttgtggttggaattcaatccttgagagcgcgatgcatggtgtgcca 245  Q
     ||||||||||| |||| |||||| || | | ||||||| ||||||    
T  1965221 ctgtggttggaactcaacccttgaaagtgtggtgcatggagtgcca 1965266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 1969058 - 1969208
Alignment:
Q  95 atctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttg 194  Q
    |||||||||||||||||||||||||||| ||||  | |||||| |||||||||| || |||||| ||||||| |||||||  ||| ||||||||||||||    
T  1969058 atctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttg 1969157  T
Q  195 agtcattgtggttggaattcaatccttgagagcgcgatgcatggtgtgcca 245  Q
    | ||||||||| |||||||||| ||||||||| | | ||||||||||||||    
T  1969158 actcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgcca 1969208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 245
Target Start/End: Complemental strand, 2004628 - 2004433
Alignment:
Q  50 atatctttcagcacaaaacgatgttgatctttcgcagtttttaccatctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggca 149  Q
    |||| ||||||||||||| |||| |||   || ||||||||| ||||| |||||||||||||||||||||||| ||||  | || ||| |||||||||      
T  2004628 atatttttcagcacaaaatgatgctgacacttggcagtttttgccatccgggttcttggagagaaccaaggagaaaggttttgtcattacatcatgggtg 2004529  T
Q  150 cctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggaattcaatccttgagagcgcgatgcatggtgtgcca 245  Q
    || |||||| ||||||| |||||||  ||||| || || ||||||| ||||||||| |||||||||| ||| ||||| | | ||||||||||||||    
T  2004528 ccgcagattcaaatcctaagtcacaactcagtcggcgggttcttgactcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgcca 2004433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 906020 - 906140
Alignment:
Q  89 tttaccatctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtgga 188  Q
    |||||||  ||| |||||||| |||| ||| ||  | ||| ||||| |||||||||||||||| ||  |||| || ||| ||||   |||| |||||||     
T  906020 tttaccaaatggtttcttggaaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggg 906119  T
Q  189 ttcttgagtcattgtggttgg 209  Q
    || ||||||||||||||||||    
T  906120 tttttgagtcattgtggttgg 906140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 15276 - 15200
Alignment:
Q  139 catcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggaattca 215  Q
    ||||||||||||||||  ||||||| ||||  || |  |||||||||||||| || |||||||||||||||||||||    
T  15276 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 15200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 57568 - 57644
Alignment:
Q  139 catcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggaattca 215  Q
    ||||||||||||||||  ||||||| ||||  || |  |||||||||||||| || |||||||||||||||||||||    
T  57568 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 57644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 3024 - 3100
Alignment:
Q  138 ccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggaattc 214  Q
    |||||||||||||||||  ||||||| || |  || |  |||||||||||||| || ||||||||||||||||||||    
T  3024 ccatcatgggcacctcaagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc 3100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 16566680 - 16566756
Alignment:
Q  138 ccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggaattc 214  Q
    |||||||||||||||||  ||||||| || |  || |  |||||||||||||| || ||||||||||||||||||||    
T  16566680 ccatcatgggcacctcaagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc 16566756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 16598982 - 16598906
Alignment:
Q  138 ccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggaattc 214  Q
    |||||||||||||||||  ||||||| || |  || |  |||||||||||||| || ||||||||||||||||||||    
T  16598982 ccatcatgggcacctcaagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattc 16598906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 3429 - 3467
Alignment:
Q  176 atcagttggtggattcttgagtcattgtggttggaattc 214  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  3429 atcagttgggggattcttgactcattgtggttggaattc 3467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 35848443 - 35848405
Alignment:
Q  176 atcagttggtggattcttgagtcattgtggttggaattc 214  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  35848443 atcagttgggggattcttgactcattgtggttggaattc 35848405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 35866114 - 35866076
Alignment:
Q  176 atcagttggtggattcttgagtcattgtggttggaattc 214  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  35866114 atcagttgggggattcttgactcattgtggttggaattc 35866076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University