View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_high_74 (Length: 252)

Name: NF5400_high_74
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_high_74
NF5400_high_74
[»] scaffold0598 (1 HSPs)
scaffold0598 (17-212)||(7903-8109)
[»] chr3 (38 HSPs)
chr3 (136-245)||(52369745-52369854)
chr3 (151-245)||(12704652-12704746)
chr3 (156-216)||(15864832-15864892)
chr3 (161-209)||(21149073-21149121)
chr3 (156-216)||(24205041-24205101)
chr3 (152-216)||(25074788-25074852)
chr3 (158-208)||(3730167-3730217)
chr3 (174-216)||(16789668-16789710)
chr3 (153-239)||(21211264-21211350)
chr3 (151-208)||(25892467-25892524)
chr3 (159-216)||(34189426-34189483)
chr3 (151-208)||(41319305-41319362)
chr3 (174-206)||(20503474-20503506)
chr3 (169-209)||(20691325-20691365)
chr3 (97-207)||(34910325-34910435)
chr3 (169-216)||(21861568-21861615)
chr3 (151-214)||(25326427-25326490)
chr3 (175-214)||(25652050-25652089)
chr3 (161-207)||(1830351-1830397)
chr3 (174-216)||(3164043-3164085)
chr3 (174-216)||(4987309-4987351)
chr3 (174-216)||(7928449-7928491)
chr3 (180-214)||(11093571-11093605)
chr3 (174-216)||(14979180-14979222)
chr3 (156-210)||(25365467-25365521)
chr3 (174-212)||(25948905-25948943)
chr3 (174-216)||(49651804-49651846)
chr3 (173-207)||(51206370-51206404)
chr3 (174-207)||(10954960-10954993)
chr3 (174-207)||(26508118-26508151)
chr3 (174-207)||(28918009-28918042)
chr3 (98-134)||(4987222-4987258)
chr3 (94-134)||(8903516-8903556)
chr3 (152-216)||(14223849-14223913)
chr3 (151-203)||(21367289-21367341)
chr3 (96-132)||(21861658-21861694)
chr3 (168-220)||(28779557-28779609)
chr3 (151-207)||(34307775-34307831)
[»] chr4 (30 HSPs)
chr4 (133-216)||(20743255-20743338)
chr4 (137-208)||(31243529-31243600)
chr4 (152-216)||(24343506-24343570)
chr4 (152-214)||(3144648-3144710)
chr4 (174-216)||(32910550-32910592)
chr4 (163-216)||(34515881-34515934)
chr4 (174-216)||(21945502-21945544)
chr4 (136-216)||(7012065-7012145)
chr4 (153-209)||(30520433-30520490)
chr4 (174-215)||(37203264-37203305)
chr4 (155-208)||(53968553-53968606)
chr4 (156-216)||(16402211-16402271)
chr4 (96-132)||(19230241-19230277)
chr4 (174-214)||(29205445-29205485)
chr4 (169-216)||(5654604-5654651)
chr4 (136-215)||(6273944-6274023)
chr4 (105-156)||(35239178-35239229)
chr4 (169-215)||(18513254-18513300)
chr4 (96-134)||(30299010-30299048)
chr4 (96-134)||(30327878-30327916)
chr4 (96-134)||(40784034-40784072)
chr4 (169-215)||(43299984-43300030)
chr4 (169-215)||(43300616-43300662)
chr4 (174-208)||(50848321-50848355)
chr4 (96-134)||(53381530-53381568)
chr4 (174-207)||(11596370-11596403)
chr4 (174-207)||(28964266-28964299)
chr4 (174-207)||(54580041-54580074)
chr4 (92-132)||(824212-824252)
chr4 (169-209)||(10546154-10546194)
[»] chr7 (28 HSPs)
chr7 (93-208)||(29812595-29812716)
chr7 (159-220)||(13427571-13427632)
chr7 (151-216)||(23930218-23930283)
chr7 (156-239)||(23751876-23751959)
chr7 (151-216)||(43249992-43250057)
chr7 (151-209)||(10230068-10230126)
chr7 (151-216)||(7133273-7133338)
chr7 (151-216)||(38804550-38804615)
chr7 (169-215)||(44020975-44021021)
chr7 (151-216)||(4017789-4017854)
chr7 (150-215)||(17780078-17780143)
chr7 (174-216)||(1885572-1885614)
chr7 (152-210)||(5938477-5938535)
chr7 (156-214)||(12278836-12278894)
chr7 (174-216)||(24339641-24339683)
chr7 (174-216)||(25481901-25481943)
chr7 (169-215)||(38134419-38134465)
chr7 (95-132)||(1433542-1433579)
chr7 (94-123)||(14729795-14729824)
chr7 (97-138)||(18035806-18035847)
chr7 (159-212)||(22683758-22683811)
chr7 (174-207)||(26033479-26033512)
chr7 (97-134)||(32287404-32287441)
chr7 (174-233)||(5954226-5954288)
chr7 (175-207)||(8234154-8234186)
chr7 (174-214)||(18233616-18233656)
chr7 (169-209)||(30606077-30606117)
chr7 (93-133)||(40131936-40131976)
[»] chr2 (27 HSPs)
chr2 (136-216)||(11307984-11308063)
chr2 (139-245)||(30563379-30563485)
chr2 (136-215)||(23354632-23354711)
chr2 (139-216)||(25544480-25544557)
chr2 (154-216)||(10535757-10535819)
chr2 (152-209)||(24011042-24011099)
chr2 (156-215)||(12748684-12748743)
chr2 (136-215)||(23354975-23355054)
chr2 (174-216)||(30404868-30404910)
chr2 (174-207)||(12668441-12668474)
chr2 (151-216)||(19573977-19574042)
chr2 (151-216)||(37986778-37986843)
chr2 (180-216)||(25317136-25317172)
chr2 (162-209)||(34006997-34007044)
chr2 (96-134)||(18840953-18840991)
chr2 (174-216)||(21374717-21374759)
chr2 (174-216)||(28677908-28677950)
chr2 (174-216)||(30298465-30298507)
chr2 (169-214)||(18570973-18571018)
chr2 (174-207)||(30335425-30335458)
chr2 (174-207)||(30717548-30717581)
chr2 (174-215)||(40681982-40682023)
chr2 (178-215)||(42418869-42418906)
chr2 (92-133)||(42511318-42511359)
chr2 (150-209)||(6698453-6698513)
chr2 (180-208)||(24894492-24894520)
chr2 (95-162)||(44635546-44635613)
[»] chr6 (29 HSPs)
chr6 (152-215)||(34446565-34446628)
chr6 (95-207)||(30781232-30781345)
chr6 (116-216)||(34229453-34229548)
chr6 (158-222)||(12235521-12235585)
chr6 (153-216)||(6389742-6389805)
chr6 (156-216)||(12086345-12086405)
chr6 (174-215)||(28715295-28715336)
chr6 (146-214)||(19602171-19602239)
chr6 (151-214)||(17168458-17168521)
chr6 (179-224)||(25010225-25010270)
chr6 (174-209)||(17168900-17168935)
chr6 (174-216)||(5970126-5970168)
chr6 (174-216)||(7977848-7977890)
chr6 (174-216)||(12696323-12696365)
chr6 (174-216)||(16766696-16766738)
chr6 (96-134)||(34595215-34595253)
chr6 (174-207)||(10770692-10770725)
chr6 (151-212)||(26247429-26247490)
chr6 (174-207)||(31384928-31384961)
chr6 (97-134)||(31959231-31959268)
chr6 (174-207)||(34595142-34595175)
chr6 (96-140)||(4878017-4878061)
chr6 (160-216)||(6299511-6299567)
chr6 (160-216)||(6306321-6306377)
chr6 (96-140)||(6389807-6389851)
chr6 (174-214)||(7569186-7569226)
chr6 (211-239)||(12787756-12787784)
chr6 (174-206)||(16388251-16388283)
chr6 (153-209)||(34541747-34541803)
[»] chr5 (29 HSPs)
chr5 (151-222)||(43554514-43554585)
chr5 (138-216)||(18607079-18607157)
chr5 (174-215)||(4344742-4344783)
chr5 (152-209)||(5467974-5468031)
chr5 (174-214)||(24906319-24906359)
chr5 (152-216)||(39695995-39696059)
chr5 (174-216)||(13287417-13287459)
chr5 (151-201)||(26205755-26205805)
chr5 (174-216)||(38749581-38749623)
chr5 (174-215)||(18162055-18162096)
chr5 (158-207)||(31264446-31264495)
chr5 (96-140)||(17123122-17123166)
chr5 (168-216)||(42469220-42469268)
chr5 (169-216)||(2577193-2577240)
chr5 (156-214)||(7997166-7997224)
chr5 (158-212)||(18586291-18586344)
chr5 (174-216)||(21191074-21191116)
chr5 (174-216)||(43001799-43001841)
chr5 (174-207)||(6247630-6247663)
chr5 (174-215)||(6471907-6471948)
chr5 (94-123)||(17593661-17593690)
chr5 (158-215)||(18288053-18288110)
chr5 (174-207)||(21576763-21576796)
chr5 (151-208)||(25863211-25863268)
chr5 (175-216)||(28296327-28296368)
chr5 (174-207)||(39698549-39698582)
chr5 (97-133)||(3966596-3966632)
chr5 (96-156)||(6247670-6247729)
chr5 (155-207)||(21137697-21137749)
[»] chr8 (27 HSPs)
chr8 (140-216)||(44067515-44067590)
chr8 (153-209)||(8017492-8017548)
chr8 (156-216)||(1676711-1676771)
chr8 (136-216)||(13009473-13009553)
chr8 (140-208)||(13845241-13845309)
chr8 (156-212)||(35431140-35431196)
chr8 (152-208)||(40063958-40064014)
chr8 (140-214)||(16869699-16869773)
chr8 (178-215)||(30068050-30068087)
chr8 (152-208)||(14513170-14513226)
chr8 (94-134)||(22652068-22652108)
chr8 (156-208)||(39820436-39820488)
chr8 (164-207)||(18646180-18646223)
chr8 (158-213)||(28883880-28883935)
chr8 (96-134)||(29510233-29510271)
chr8 (94-140)||(39820503-39820549)
chr8 (96-134)||(40064043-40064081)
chr8 (174-216)||(41831958-41832000)
chr8 (159-216)||(3658146-3658203)
chr8 (174-207)||(4948660-4948693)
chr8 (99-132)||(13203700-13203733)
chr8 (174-207)||(25566849-25566882)
chr8 (151-216)||(26915235-26915300)
chr8 (174-215)||(28642408-28642449)
chr8 (136-208)||(3911117-3911189)
chr8 (175-207)||(6211456-6211488)
chr8 (94-134)||(24413497-24413537)
[»] chr1 (24 HSPs)
chr1 (151-215)||(42004942-42005006)
chr1 (154-215)||(21145466-21145528)
chr1 (158-214)||(22794080-22794136)
chr1 (151-214)||(6936395-6936458)
chr1 (151-216)||(40747768-40747833)
chr1 (159-216)||(48415728-48415786)
chr1 (96-156)||(22881567-22881627)
chr1 (159-245)||(11634127-11634215)
chr1 (174-214)||(42325561-42325601)
chr1 (94-138)||(48450548-48450592)
chr1 (174-216)||(113298-113340)
chr1 (174-216)||(398783-398825)
chr1 (96-134)||(9828136-9828174)
chr1 (174-216)||(17754310-17754352)
chr1 (169-207)||(30847733-30847771)
chr1 (174-207)||(1486727-1486760)
chr1 (174-207)||(6612189-6612222)
chr1 (174-207)||(18190126-18190159)
chr1 (174-207)||(24577204-24577237)
chr1 (174-207)||(40258951-40258984)
chr1 (96-132)||(7918154-7918190)
chr1 (174-210)||(11571590-11571626)
chr1 (174-206)||(18337338-18337370)
chr1 (96-140)||(34741921-34741965)
[»] scaffold0199 (1 HSPs)
scaffold0199 (156-216)||(1948-2008)
[»] scaffold0066 (1 HSPs)
scaffold0066 (152-216)||(33360-33423)
[»] scaffold0007 (1 HSPs)
scaffold0007 (140-216)||(225253-225328)
[»] scaffold0154 (1 HSPs)
scaffold0154 (95-134)||(13505-13544)
[»] scaffold1528 (1 HSPs)
scaffold1528 (174-216)||(1034-1076)
[»] scaffold0223 (1 HSPs)
scaffold0223 (174-216)||(20171-20213)
[»] scaffold0136 (1 HSPs)
scaffold0136 (174-216)||(3867-3909)
[»] scaffold0103 (1 HSPs)
scaffold0103 (174-216)||(51810-51852)
[»] scaffold0050 (1 HSPs)
scaffold0050 (174-216)||(70277-70319)
[»] scaffold0027 (1 HSPs)
scaffold0027 (174-216)||(46681-46723)
[»] scaffold0652 (1 HSPs)
scaffold0652 (97-134)||(403-440)
[»] scaffold0361 (1 HSPs)
scaffold0361 (174-207)||(14538-14571)


Alignment Details
Target: scaffold0598 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 7903 - 8109
Alignment:
Q  17 acaataaagggataaaaattaaaaagagtaattaattgaatgcttg-----------ctttattcttgaactttgctggtgtcaccaaagctatgaagta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||           |||||| ||||||||||||||||||| || |||||||||||||    
T  7903 acaataaagggataaaaattaaaaagagtaattaattgaatgcttgttttaccggtgctttatccttgaactttgctggtgtctccgaagctatgaagta 8002  T
Q  106 cggacactcctcggattagatgtgtcccgtgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattat 205  Q
    || ||||| ||| ||||||||||||||||||||| ||||||||| ||| |||||||||| | |||||||||||||||||||||||||||| |||||||||    
T  8003 cgcacacttctccgattagatgtgtcccgtgtcgatgtccgacaccgaaaccgacacgatacctatgtttacactgaattatgtcattttctcaaattat 8102  T
Q  206 tatccgt 212  Q
    |||||||    
T  8103 tatccgt 8109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 52369854 - 52369745
Alignment:
Q  136 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccggtatccgtgtttg 235  Q
    |||||||||||| | |||||||||||||||| ||||| ||||| |||||||||| ||||| |||||||||||||| ||||||||||||| ||||||| ||    
T  52369854 gtcggtgtccgataccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattatccatgtcgtgtccggtgtccgtgtctg 52369755  T
Q  236 tgtctgtgct 245  Q
    |||| |||||    
T  52369754 tgtccgtgct 52369745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 12704652 - 12704746
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccggtatccgtgtttgtgtctgtgct 245  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||| |||||    
T  12704652 cgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgttgtgtccggtgtccttgtctgtgtccgtgct 12704746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 15864892 - 15864832
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||    
T  15864892 ccgacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcg 15864832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 21149121 - 21149073
Alignment:
Q  161 acgacatctatgtttacactgaattatgtcattttttcaaattattatc 209  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||||    
T  21149121 acgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 24205041 - 24205101
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||  |||  |||||||| ||||||||||||| ||||||||||||||||||||    
T  24205041 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcg 24205101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 25074852 - 25074788
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||| ||  ||||| ||||||| |||||||||||||| ||||||||||||| ||||||    
T  25074852 gacaccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatcggtgtcg 25074788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 3730167 - 3730217
Alignment:
Q  158 gacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    ||||||||| ||||| |||||||||||||||||||| | ||||||||||||    
T  3730167 gacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 16789668 - 16789710
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  16789668 ttacactgaattatgtcattttctcaaattattatctgtgtcg 16789710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 21211350 - 21211264
Alignment:
Q  153 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccggtatccgtgtttgtgtc 239  Q
    |||||||||||||| | ||  |||||||||| ||||| ||||| |||||||||||||||||| || |||| | || |||| ||||||    
T  21211350 acaccgacacgacacccataattacactgaactatgtaattttctcaaattattatccgtgttgtatccgatgtctgtgtctgtgtc 21211264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 25892524 - 25892467
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    |||||| ||||||||| ||||| |||||||||||||| ||||||| | ||||||||||    
T  25892524 cgacactgacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 34189483 - 34189426
Alignment:
Q  159 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||| ||| | |||||||||| ||||||||||| ||||||||||||| ||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtcg 34189426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 41319305 - 41319362
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    ||||||||||||||||  ||   ||||| |||||||||||||||||||||||||||||    
T  41319305 cgacaccgacacgacacatacaattacattgaattatgtcattttttcaaattattat 41319362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 20503506 - 20503474
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatt 206  Q
    |||||||||||||||||||||||||||||||||    
T  20503506 ttacactgaattatgtcattttttcaaattatt 20503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 20691365 - 20691325
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatc 209  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  20691365 tatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 34910435 - 34910325
Alignment:
Q  97 tatgaagtacggacactcctcggattagatgtgtcccg-tgtcggtgtccgacatcgacaccgacac-gacatctatgtttacactgaattatgtcattt 194  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||  ||||||||| ||| || ||||| |||   | |  |||||||||||||||| ||||    
T  34910435 tatgaagcacggacactcctcggattagacgtgtcccggtgtca-tgtccgacaccgatac-gacaccgactcttgtaattacactgaattatgtgattt 34910338  T
Q  195 tttcaaattatta 207  Q
    |||||||||||||    
T  34910337 tttcaaattatta 34910325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 21861615 - 21861568
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||| ||||||||||||||||||||||| |||||| ||||| ||||||    
T  21861615 tatgattacactgaattatgtcatttttccaaattgttatctgtgtcg 21861568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 25326490 - 25326427
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    ||||||| |||||||||||||  ||||||| |||||| | ||||||| ||||||||||| ||||    
T  25326490 cgacaccaacacgacatctataattacactaaattatattatttttttaaattattatctgtgt 25326427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 25652050 - 25652089
Alignment:
Q  175 tacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  25652050 tacactgaattatatcattttctcaaattattatccgtgt 25652089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  161 acgacatctatgtttacactgaattatgtcattttttcaaattatta 207  Q
    |||||| ||||| |||||||||||||||||||||| | |||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 3164043 - 3164085
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  3164043 ttacactgaattatgtgattttttcaaattattagctgtgtcg 3164085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 4987309 - 4987351
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  4987309 ttacactgaattatgtgattttttcaaattattagctgtgtcg 4987351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 7928491 - 7928449
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  7928491 ttacactgaattatgtgattttttcaaattattagcggtgtcg 7928449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 11093605 - 11093571
Alignment:
Q  180 tgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||||||||||||||||||||||||||| ||||    
T  11093605 tgaattatgtcattttttcaaattattatcagtgt 11093571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 14979222 - 14979180
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  14979222 ttacactgaattatgtgattttttcaaattattagctgtgtcg 14979180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 25365521 - 25365467
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatcc 210  Q
    |||||||||||  |||| |||||| |||||||||||| || ||||||||||||||    
T  25365521 ccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 25948905 - 25948943
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgt 212  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  25948905 ttacactgaattatgtgattttttcaaattattagccgt 25948943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 49651804 - 49651846
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||| |||||||||| ||||||||||||||||| ||||||||    
T  49651804 ttacagtgaattatgtgattttttcaaattattagccgtgtcg 49651846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 51206370 - 51206404
Alignment:
Q  173 tttacactgaattatgtcattttttcaaattatta 207  Q
    ||||||||||||||||| |||||||||||||||||    
T  51206370 tttacactgaattatgtgattttttcaaattatta 51206404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 10954993 - 10954960
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  10954993 ttacactgaattatgtgattttttcaaattatta 10954960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 26508151 - 26508118
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  26508151 ttacactgaattatgtgattttttcaaattatta 26508118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 28918042 - 28918009
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  28918042 ttacactgaattatgtgattttttcaaattatta 28918009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 4987222 - 4987258
Alignment:
Q  98 atgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||||||||||||||||||||||  ||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccg 4987258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 8903556 - 8903516
Alignment:
Q  94 agctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||||| ||| |||||||||||||||| |||||||||    
T  8903556 agctatgaagcacgaacactcctcggattaggtgtgtcccg 8903516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 14223849 - 14223913
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||  ||||  |||||| |||||| || |||| ||||||||||||| ||||||    
T  14223849 gacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtgtcg 14223913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 21367341 - 21367289
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaatt 203  Q
    |||||||||||| ||| | ||| ||||||| |||||||||||||| |||||||    
T  21367341 cgacaccgacacaacaaccatgattacactaaattatgtcattttctcaaatt 21367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 21861694 - 21861658
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcc 132  Q
    |||||||| |||||||||||||||||||| |||||||    
T  21861694 ctatgaagcacggacactcctcggattaggtgtgtcc 21861658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 28779609 - 28779557
Alignment:
Q  168 ctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtc 220  Q
    ||||| |||||||||||||||||||||| |||  |||||||  ||||||||||    
T  28779609 ctatgattacactgaattatgtcattttatcatgttattattggtgtcgtgtc 28779557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 34307775 - 34307831
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattatta 207  Q
    ||||||||||||||||  |||  |||||||||| ||||| ||||| |||||||||||    
T  34307775 cgacaccgacacgacacttataattacactgaaatatgtgattttctcaaattatta 34307831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 20743255 - 20743338
Alignment:
Q  133 cgtgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  20743255 cgtgtcggtgtctgacatcgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcg 20743338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 31243529 - 31243600
Alignment:
Q  137 tcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    ||||||||||||| | ||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||    
T  31243529 tcggtgtccgacaccaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 24343570 - 24343506
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||| ||||||||||||||||||||    
T  24343570 gacaccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcg 24343506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 3144648 - 3144710
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||| | ||||||||||||||||    
T  3144648 gacaccgacacgacacctatgattacactaaattatatcattttctgaaattattatccgtgt 3144710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 32910592 - 32910550
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  32910592 ttacactgaattatgtcattttctcaaattattatccgtgtcg 32910550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 34515881 - 34515934
Alignment:
Q  163 gacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||| |||||||||||||||||||||||||||| |  |||||||||||||||||    
T  34515881 gacacctatgtttacactgaattatgtcattttcttgaattattatccgtgtcg 34515934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 21945544 - 21945502
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  21945544 ttacactgaattatgtcattttttcaaattattagctgtgtcg 21945502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 7012145 - 7012065
Alignment:
Q  136 gtcggtgtccgacatcgacaccgacac-gacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||| ||||||  |||| || | ||||| | |||||||||||||||||||| ||||||||||||| ||||||    
T  7012145 gtcggtgtccgacaccgacaca-acaccgatacctatgatcacactgaattatgtcattttctcaaattattatcggtgtcg 7012065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 30520433 - 30520490
Alignment:
Q  153 acaccgacacgacatctatgtttacactgaattatgtca-ttttttcaaattattatc 209  Q
    |||| ||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  30520433 acactgacactacacctatgattacactgaattatgtcatttttttcaaattattatc 30520490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 37203305 - 37203264
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  37203305 ttacactaaattatgtcattttttcaaattattagccgtgtc 37203264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 53968606 - 53968553
Alignment:
Q  155 accgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    |||||||||||||||||| |  ||||||||||||||||||| | ||||||||||    
T  53968606 accgacacgacatctatgatatcactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 16402211 - 16402271
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||| ||||  |||||||| || |||| ||||| ||||||||||||||||||||    
T  16402211 ccgacacgacagctataattacactgtatcatgttattttctcaaattattatccgtgtcg 16402271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 19230241 - 19230277
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcc 132  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19230241 ctatgaagtacggacactcttcggattagatgtgtcc 19230277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 29205485 - 29205445
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  29205485 ttacactgaattatgtgattttttcaaattattagccgtgt 29205445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 5654604 - 5654651
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||| ||||| |||||||||||||||| ||||||||||||| ||||||    
T  5654604 tatgattacattgaattatgtcattttctcaaattattatcagtgtcg 5654651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 6274023 - 6273944
Alignment:
Q  136 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||| |||| |||| |||||||||||||||  ||||  ||||||| |||||| ||||||| |||||||||| || |||||    
T  6274023 gtcgatgtctgacaccgacaccgacacgacgactataattacactaaattatatcattttctcaaattattgtctgtgtc 6273944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 35239229 - 35239178
Alignment:
Q  105 acggacactcctcggattagatgtgtcccgtgtcggtgtccgacatcgacac 156  Q
    ||||||||||||||||||||| |||||| | ||| |||||||||| ||||||    
T  35239229 acggacactcctcggattagacgtgtccagggtcagtgtccgacaccgacac 35239178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 18513254 - 18513300
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||| ||||| |||||||||||||||| ||||||||||||| |||||    
T  18513254 tatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 30299048 - 30299010
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  30299048 ctatgaagcacggacactcctcggattagacgtgtcccg 30299010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 30327916 - 30327878
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  30327916 ctatgaagcacggacactcctcggattagacgtgtcccg 30327878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 40784072 - 40784034
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  40784072 ctatgaagcacggacactcctcggattaggtgtgtcccg 40784034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 43299984 - 43300030
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||| ||||| |||||||||| ||||| |||||||||||||||||||    
T  43299984 tatgattacattgaattatgtaattttctcaaattattatccgtgtc 43300030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 43300662 - 43300616
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||| ||||| |||||||||| ||||| |||||||||||||||||||    
T  43300662 tatgattacattgaattatgtaattttctcaaattattatccgtgtc 43300616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 50848321 - 50848355
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattat 208  Q
    |||||||||||||| ||||||||||||||||||||    
T  50848321 ttacactgaattatatcattttttcaaattattat 50848355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 53381530 - 53381568
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccg 53381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 11596370 - 11596403
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  11596370 ttacactgaattatgtgattttttcaaattatta 11596403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 28964266 - 28964299
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  28964266 ttacactgaattatgtgattttttcaaattatta 28964299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 54580041 - 54580074
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  54580041 ttacactgaattatgtgattttttcaaattatta 54580074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 824212 - 824252
Alignment:
Q  92 aaagctatgaagtacggacactcctcggattagatgtgtcc 132  Q
    |||||||||||| ||||||| ||||||||||||| ||||||    
T  824212 aaagctatgaagcacggacagtcctcggattagacgtgtcc 824252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 10546194 - 10546154
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatc 209  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 29812595 - 29812716
Alignment:
Q  93 aagctatgaagtacggacactcctcggattagatgtgtcccgtgtcggtgt------ccgacatcgacaccgacacgacatctatgtttacactgaatta 186  Q
    ||||||||||| ||||||||| ||||||||||  |||||||||||||||||      |||||| |||||||||||||||| ||||| ||||||| |||||    
T  29812595 aagctatgaagcacggacacttctcggattaggcgtgtcccgtgtcggtgtccgacaccgacaccgacaccgacacgacacctatgattacactaaatta 29812694  T
Q  187 tgtcattttttcaaattattat 208  Q
    | ||||||| ||||||||||||    
T  29812695 tatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 13427632 - 13427571
Alignment:
Q  159 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtc 220  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  13427632 acacgacatctatgattatactaaattatgtcattttttcaaattattttccgtgtcgtgtc 13427571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 23930283 - 23930218
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  23930283 cgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgtcg 23930218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 23751959 - 23751876
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccggtatccgtgtttgtgtc 239  Q
    ||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||||||||||| | || | || |||||||||||    
T  23751959 ccgacacgacacctatgattacactaaattatatcattttatcaaattattatccgtgtcgtattcgatgtctgtgtttgtgtc 23751876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 43250057 - 43249992
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||||||||  |||  |||||||| ||||||||||||| ||||||||||||||||||||    
T  43250057 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcg 43249992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 10230068 - 10230126
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 209  Q
    ||||||| |||||||||||||  |||||||||||||||||||||  |||||||||||||    
T  10230068 cgacaccaacacgacatctatacttacactgaattatgtcatttcctcaaattattatc 10230126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 7133273 - 7133338
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||||  || ||||| |||||||||||||||||||||| ||||||||| ||| ||||||    
T  7133273 cgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgtgtcg 7133338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 38804550 - 38804615
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||| |||||||| ||||| |||| ||| ||||||||||||| | ||||||||||||||||||    
T  38804550 cgacaccaacacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcg 38804615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 44021021 - 44020975
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||    
T  44021021 tatggttacattgaattatgtaattttttcaaattattatccgtgtc 44020975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 4017789 - 4017854
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||| ||||||||  |||| ||||||| |||||| || |||| ||||||||||||||||||||    
T  4017789 cgacaccaacacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcg 4017854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 17780078 - 17780143
Alignment:
Q  150 tcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    ||||||||||||||||| ||||  |||||  ||||||||||||||| | |||||||||||| ||||    
T  17780078 tcgacaccgacacgacacctattattacatagaattatgtcattttcttaaattattatccatgtc 17780143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 1885614 - 1885572
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||| |||||||||||||||||||||| | ||||||||||||    
T  1885614 ttacattgaattatgtcattttttcaaaattttatccgtgtcg 1885572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 5938535 - 5938477
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatcc 210  Q
    ||||||||||| ||| ||||  ||| |||||||||||| ||||| ||||||||||||||    
T  5938535 gacaccgacacaacacctataattatactgaattatgttattttatcaaattattatcc 5938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 12278894 - 12278836
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||||||||  |||  |||||||||||||||||||||| | ||||||||||| ||||    
T  12278894 ccgacacgacacatataattacactgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 24339683 - 24339641
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  24339683 ttacactgaattatgtgattttttcaaattattagctgtgtcg 24339641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 25481943 - 25481901
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  25481943 ttacactgaattatgtgattttttcaaattattagctgtgtcg 25481901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 38134419 - 38134465
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||| ||||| |||||||||||||||| ||||||||||||| |||||    
T  38134419 tatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 1433579 - 1433542
Alignment:
Q  95 gctatgaagtacggacactcctcggattagatgtgtcc 132  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  1433579 gctatgaagcacggacactcctcggattagacgtgtcc 1433542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 14729824 - 14729795
Alignment:
Q  94 agctatgaagtacggacactcctcggatta 123  Q
    ||||||||||||||||||||||||||||||    
T  14729824 agctatgaagtacggacactcctcggatta 14729795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 18035806 - 18035847
Alignment:
Q  97 tatgaagtacggacactcctcggattagatgtgtcccgtgtc 138  Q
    ||||||| ||||||||||||||||||||| |||| |||||||    
T  18035806 tatgaagcacggacactcctcggattagacgtgttccgtgtc 18035847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 22683758 - 22683811
Alignment:
Q  159 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 212  Q
    |||||||| ||||| || ||||||||||| |||| || ||||||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgt 22683811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 26033479 - 26033512
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  26033479 ttacactgaattatgtgattttttcaaattatta 26033512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 32287404 - 32287441
Alignment:
Q  97 tatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccg 32287441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 5954288 - 5954226
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta---tccgtgtcgtgtccggtatccgtgtt 233  Q
    |||||||  ||||||| |||||||||||||||||   |||||||||||||| || ||||||||    
T  5954288 ttacactagattatgtaattttttcaaattattagtgtccgtgtcgtgtcctgtgtccgtgtt 5954226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 8234186 - 8234154
Alignment:
Q  175 tacactgaattatgtcattttttcaaattatta 207  Q
    ||||||||||||||| |||||||||||||||||    
T  8234186 tacactgaattatgttattttttcaaattatta 8234154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 18233616 - 18233656
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||||||||||||||||||| |||||||| |||| ||||    
T  18233616 ttacactgaattatgtcattttctcaaattactatctgtgt 18233656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 30606077 - 30606117
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatc 209  Q
    |||| ||||| |||||||||||||||||| |||||||||||    
T  30606077 tatggttacattgaattatgtcattttttgaaattattatc 30606117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 40131936 - 40131976
Alignment:
Q  93 aagctatgaagtacggacactcctcggattagatgtgtccc 133  Q
    ||||||||||| || |||||||||||||||||| |||||||    
T  40131936 aagctatgaagcacagacactcctcggattagacgtgtccc 40131976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 11307984 - 11308063
Alignment:
Q  136 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  11307984 gtcggtgtccaacaccgacaccgacacgacacctatgattacactgaattatgtcattttttcaaatta-tatccgtgtcg 11308063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 30563485 - 30563379
Alignment:
Q  139 ggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccggtatccgtgtttgtgt 238  Q
    |||||||||||  ||||||||||| ||| ||||  ||||| |||||||||||||||| ||||||||||||||||||||||||  || | |||||||||||    
T  30563485 ggtgtccgacactgacaccgacacaacacctatagttacattgaattatgtcattttctcaaattattatccgtgtcgtgtctagtgttcgtgtttgtgt 30563386  T
Q  239 ctgtgct 245  Q
     ||||||    
T  30563385 atgtgct 30563379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 23354632 - 23354711
Alignment:
Q  136 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||||||  |||||||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||| |||||    
T  23354632 gtcggtgtccgaccccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatctgtgtc 23354711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 25544557 - 25544480
Alignment:
Q  139 ggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||| ||||  ||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||| |||||||    
T  25544557 ggtgtctgacactgacaccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcg 25544480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 10535757 - 10535819
Alignment:
Q  154 caccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||| ||||||||  |||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcg 10535819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 24011099 - 24011042
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 209  Q
    ||||||||| ||||| ||||| ||||||| |||||||||||||| |||||||||||||    
T  24011099 gacaccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 12748743 - 12748684
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    ||||||| ||| ||||| |||||||||| ||||||||||| |||||||||||||| ||||    
T  12748743 ccgacacaacacctatgattacactgaactatgtcattttctcaaattattatccatgtc 12748684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 23354975 - 23355054
Alignment:
Q  136 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||| ||  ||||||||||| |||| ||||| || |||| |||||| ||||||| ||||||||||||| |||||    
T  23354975 gtcggtgtccaaccccgacaccgacatgacacctatgattgcactaaattatatcattttctcaaattattatctgtgtc 23355054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 30404868 - 30404910
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| ||||||||    
T  30404868 ttacactgaattatgtgattttttcaaattattaaccgtgtcg 30404910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 12668441 - 12668474
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    ||||||||||||||||||||||||||||||||||    
T  12668441 ttacactgaattatgtcattttttcaaattatta 12668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 19574042 - 19573977
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||||| || ||||  |||||||||||||||| ||||| | ||||||||||| ||||||    
T  19574042 cgacaccgacacgccacctataattacactgaattatgttattttcttaaattattatcggtgtcg 19573977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 37986843 - 37986778
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||| |||||| | ||||| ||||||| || ||| ||||||||||||||||||||| ||||||    
T  37986843 cgacaccaacacgatacctatgattacactcaaatatatcattttttcaaattattatctgtgtcg 37986778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 25317172 - 25317136
Alignment:
Q  180 tgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||||||||||||||||| ||||||    
T  25317172 tgaattatgtcattttttcaaattattatcggtgtcg 25317136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 34006997 - 34007044
Alignment:
Q  162 cgacatctatgtttacactgaattatgtcattttttcaaattattatc 209  Q
    ||||| ||||| |||||||||||||||||| ||| |||||||||||||    
T  34006997 cgacacctatgattacactgaattatgtcaatttctcaaattattatc 34007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 18840953 - 18840991
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccg 18840991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 21374717 - 21374759
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  21374717 ttacactgaattatgtaattttttcaaattattagctgtgtcg 21374759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 28677950 - 28677908
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  28677950 ttacactgaattatgtgattttttcaaattattagcggtgtcg 28677908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 30298465 - 30298507
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||||||||| | ||||||||||| ||||||    
T  30298465 ttacactgaattatgtcattttattaaattattatcggtgtcg 30298507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 18571018 - 18570973
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||| ||||| |||||||||||||||| ||||||||||||| ||||    
T  18571018 tatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 30335458 - 30335425
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    ||||||| ||||||||||||||||||||||||||    
T  30335458 ttacactaaattatgtcattttttcaaattatta 30335425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 30717548 - 30717581
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  30717548 ttacactgaattatgtgattttttcaaattatta 30717581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 40682023 - 40681982
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    ||||| |||||||||||||||| ||||||||||||| |||||    
T  40682023 ttacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 42418906 - 42418869
Alignment:
Q  178 actgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  42418906 actgaattatgtcattttttcaaatttttatacgtgtc 42418869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 42511318 - 42511359
Alignment:
Q  92 aaagctatgaagtacggacactcctcggattagatgtgtccc 133  Q
    |||||||||||| ||||||||||||||||||||  |||||||    
T  42511318 aaagctatgaagcacggacactcctcggattagccgtgtccc 42511359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 6698453 - 6698513
Alignment:
Q  150 tcgacaccgacacgacatctatgtttacactgaattatgtca-ttttttcaaattattatc 209  Q
    |||||||| | ||||||  |||| |||||||||||||| ||| ||||||||||||||||||    
T  6698453 tcgacaccaatacgacacgtatgattacactgaattatttcacttttttcaaattattatc 6698513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 24894520 - 24894492
Alignment:
Q  180 tgaattatgtcattttttcaaattattat 208  Q
    |||||||||||||||||||||||||||||    
T  24894520 tgaattatgtcattttttcaaattattat 24894492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 44635613 - 44635546
Alignment:
Q  95 gctatgaagtacggacactcctcggattagatgtgtc-ccgtgtcggtgtccgacatcgacaccgacac 162  Q
    ||||||||| ||||||||||||| ||||||  ||||| | ||||| |||||||||| ||||||||||||    
T  44635613 gctatgaagcacggacactcctcagattaggcgtgtctcggtgtc-gtgtccgacaccgacaccgacac 44635546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 34446628 - 34446565
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    ||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  34446628 gacaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtgtc 34446565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 30781232 - 30781345
Alignment:
Q  95 gctatgaagtacggacactcctcggattagatgtgtcccg-tgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcatt 193  Q
    ||||||||| ||| |||||||||||||||  ||||||||| |||| ||||| || || |||||||||| |||| ||||| ||||| | ||||||||||||    
T  30781232 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcagtgtctgatattgacaccgacatgacacctatgattacaattaattatgtcatt 30781331  T
Q  194 ttttcaaattatta 207  Q
    || |||||||||||    
T  30781332 ttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 34229548 - 34229453
Alignment:
Q  116 tcggattagatgtgtcccgtgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||||||||||||     |||||||||| ||||||| ||||| |||||||  ||||||||| || |||||||||||||||||||||||| ||||    
T  34229548 tcggattagatgtgtcccg-----gtgtccgacaccgacaccaacacggcatctattattacactgacttgtgtcattttttcaaattattatccatgtc 34229454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 12235521 - 12235585
Alignment:
Q  158 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccg 222  Q
    ||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||| ||||||    
T  12235521 gacacgacacctatgattacactgaattatgtcattttctctaattattatccgtgtcatgtccg 12235585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 6389805 - 6389742
Alignment:
Q  153 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||||||||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcg 6389742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 12086345 - 12086405
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||| ||||| ||| |||||||||||||||| | ||||||||||||||||||||    
T  12086345 ccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcg 12086405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 28715336 - 28715295
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  28715336 ttacactgaattatgtcattttttcaaattattagccgtgtc 28715295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 19602171 - 19602239
Alignment:
Q  146 gacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    ||||| ||||||||||| | | ||||| |||||||||||||| ||||||| ||||||||||||| ||||    
T  19602171 gacatggacaccgacacaatacctatgattacactgaattatatcattttctcaaattattatcagtgt 19602239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 17168458 - 17168521
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||||||||||||| ||||  ||||||| |||||| ||||||| ||||||||||||| ||||    
T  17168458 cgacaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgt 17168521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 25010225 - 25010270
Alignment:
Q  179 ctgaattatgtcattttttcaaattattatccgtgtcgtgtccggt 224  Q
    ||||||||||| ||||||||||||||||| | ||||||||||||||    
T  25010225 ctgaattatgtgattttttcaaattattagctgtgtcgtgtccggt 25010270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 17168935 - 17168900
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatc 209  Q
    ||||| ||||||||||||||||||||||||||||||    
T  17168935 ttacattgaattatgtcattttttcaaattattatc 17168900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 5970126 - 5970168
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  5970126 ttacactgaattatgtgattttttcaaattattaactgtgtcg 5970168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 7977848 - 7977890
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  7977848 ttacactgaattatgtaattttttcaaattattagctgtgtcg 7977890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 12696365 - 12696323
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  12696365 ttacactgaattatgtaattttttcaaattattagctgtgtcg 12696323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 16766738 - 16766696
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  16766738 ttacactgaattatgtgattttttcaaattattagctgtgtcg 16766696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 34595253 - 34595215
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccg 34595215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 10770692 - 10770725
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  10770692 ttacactgaattatgtgattttttcaaattatta 10770725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 26247490 - 26247429
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 212  Q
    |||||||||||||| | ||||| ||| ||| || ||||||||||| | ||||||||||||||    
T  26247490 cgacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatccgt 26247429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 31384961 - 31384928
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  31384961 ttacactgaattatgtgattttttcaaattatta 31384928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 31959268 - 31959231
Alignment:
Q  97 tatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccg 31959231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 34595175 - 34595142
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  34595175 ttacactgaattatgtgattttttcaaattatta 34595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 4878061 - 4878017
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 140  Q
    |||||||| ||||||||||||||||||||  |||||| |||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcctgtgtcgg 4878017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 6299567 - 6299511
Alignment:
Q  160 cacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||| ||||  ||||| |||||||| ||||||| |||||||||||||| |||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcg 6299511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 6306377 - 6306321
Alignment:
Q  160 cacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||| ||||  ||||| |||||||| ||||||| |||||||||||||| |||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcg 6306321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 6389851 - 6389807
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 140  Q
    |||||||| ||||||||| ||||||||||  ||||||||||||||    
T  6389851 ctatgaagcacggacacttctcggattaggagtgtcccgtgtcgg 6389807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 7569186 - 7569226
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  7569186 ttacactgaattatgtaattttctcaaattattatctgtgt 7569226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 12787784 - 12787756
Alignment:
Q  211 gtgtcgtgtccggtatccgtgtttgtgtc 239  Q
    |||||||||||||||||||||||||||||    
T  12787784 gtgtcgtgtccggtatccgtgtttgtgtc 12787756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 16388251 - 16388283
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatt 206  Q
    |||||||||||||||| ||||||||||||||||    
T  16388251 ttacactgaattatgtgattttttcaaattatt 16388283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 34541747 - 34541803
Alignment:
Q  153 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 209  Q
    ||||||||| ||||  |||| ||||| |||||| |||||||||||| ||||||||||    
T  34541747 acaccgacatgacacatatgattacattgaattttgtcattttttctaattattatc 34541803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 43554585 - 43554514
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcgtgtccg 222  Q
    |||||||||||||||| ||||| ||||||| |||||| ||||||| |||||||||||| |||||||||||||    
T  43554585 cgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgtgtcgtgtccg 43554514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 18607079 - 18607157
Alignment:
Q  138 cggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||| |||| | |||| ||||||||| ||||| ||||| |||||||||| ||||| |||||||||||||| |||||    
T  18607079 cggtgtcggacaccaacacagacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcg 18607157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 4344783 - 4344742
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  4344783 ttacactgaattatgtcattttttcaaattattatcggtgtc 4344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 5467974 - 5468031
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 209  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||| |||||||||||||    
T  5467974 gacaccgacacgacacctataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 24906319 - 24906359
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  24906319 ttacactgaattatgtcattttttcaaattattatctgtgt 24906359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 39695995 - 39696059
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||| |||||||||| || ||||||    
T  39695995 gacaccgacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtcg 39696059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 13287417 - 13287459
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  13287417 ttacactgaattatgtgattttttcaaattattatctgtgtcg 13287459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 26205755 - 26205805
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaa 201  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||| |||||    
T  26205755 cgacaccaacacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 38749581 - 38749623
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  38749581 ttacattgaattatgtcattttttcaaattattatcggtgtcg 38749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 18162096 - 18162055
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  18162096 ttacactgaattatgtcattttcttaaattattatccgtgtc 18162055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  158 gacacgacatctatgtttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||  |||| |||||||||||||||||||||| |||||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 17123166 - 17123122
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 140  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtcccgtgtcgg 17123122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 42469268 - 42469220
Alignment:
Q  168 ctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||| ||||||| || ||||||||||| ||||||||||||||||||||    
T  42469268 ctatgattacactaaaatatgtcattttctcaaattattatccgtgtcg 42469220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 2577193 - 2577240
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||| ||||||| |||||||||||||| ||||||||||||| ||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcg 2577240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 7997166 - 7997224
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||||||||  |||  |||||||| ||||| ||||||| ||||||||||||||||||    
T  7997166 ccgacacgacacttataattacactgtattatatcattttctcaaattattatccgtgt 7997224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 18586291 - 18586344
Alignment:
Q  158 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 212  Q
    ||||||||| ||||  |||||||| ||||||||| ||||||||||||||||||||    
T  18586291 gacacgacacctataattacactgtattatgtca-tttttcaaattattatccgt 18586344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 21191074 - 21191116
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  21191074 ttacactgaattatgtgattttttcaaattattagctgtgtcg 21191116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 43001841 - 43001799
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  43001841 ttacactgaattatgtaattttttcaaattattagcagtgtcg 43001799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 6247663 - 6247630
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  6247663 ttacactgaattatgtgattttttcaaattatta 6247630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 6471907 - 6471948
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||||||||| ||||| ||||||||||| |||||||    
T  6471907 ttacactgaattatgtgattttctcaaattattagccgtgtc 6471948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 123
Target Start/End: Original strand, 17593661 - 17593690
Alignment:
Q  94 agctatgaagtacggacactcctcggatta 123  Q
    ||||||||||||||||||||||||||||||    
T  17593661 agctatgaagtacggacactcctcggatta 17593690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 18288053 - 18288110
Alignment:
Q  158 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||| |||| ||||| ||| ||||| ||| |||||||| |||||||||||||||||||    
T  18288053 gacatgacacctatgattatactgagttaagtcattttctcaaattattatccgtgtc 18288110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 21576763 - 21576796
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  21576763 ttacactgaattatgtgattttttcaaattatta 21576796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 25863268 - 25863211
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    |||||| |||||||||  |||  |||||||||||||| ||||||| ||||||||||||    
T  25863268 cgacactgacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 28296368 - 28296327
Alignment:
Q  175 tacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||| |||||||||||||||| ||||||||||||| ||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggtgtcg 28296327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 39698582 - 39698549
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  39698582 ttacactgaattatgtgattttttcaaattatta 39698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 3966632 - 3966596
Alignment:
Q  97 tatgaagtacggacactcctcggattagatgtgtccc 133  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  3966632 tatgaagcacggacactcctcggattagacgtgtccc 3966596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 6247729 - 6247670
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcggtgtccgacatcgacac 156  Q
    |||||||| || |||||| |||||||||| ||||||||||| | |||||||||| ||||||    
T  6247729 ctatgaagcacagacacttctcggattaggtgtgtcccgtg-ccgtgtccgacaccgacac 6247670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 21137749 - 21137697
Alignment:
Q  155 accgacacgacatctatgtttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||| ||||| || |||||||||| |||||||| ||| |||||||    
T  21137749 accgacacgacacctatgatttcactgaattacgtcattttctcagattatta 21137697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 44067590 - 44067515
Alignment:
Q  140 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||| ||||||||||||||||  |||  |||||||| ||||||||||||| ||||||||||||||||||||    
T  44067590 gtgtccgaca-cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcg 44067515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 8017548 - 8017492
Alignment:
Q  153 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 209  Q
    |||| ||||||||||||||| ||||||| |||||||||||||||||| |||||||||    
T  8017548 acactgacacgacatctatgattacactcaattatgtcattttttcatattattatc 8017492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 1676771 - 1676711
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||| ||||| ||||||| || |||||||||||  |||||||||||||||||||    
T  1676771 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcg 1676711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 13009473 - 13009553
Alignment:
Q  136 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||| |||| | ||||||||||||||  |||| ||||||| |||||| |  |||| ||||||||||||||||||||    
T  13009473 gtcggtgtctgacacctacaccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcg 13009553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 13845309 - 13845241
Alignment:
Q  140 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    |||||||||| |||||| ||||||||| ||||| |||| || |||||| ||||||| ||||||||||||    
T  13845309 gtgtccgacaccgacacagacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 35431140 - 35431196
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 212  Q
    ||||||||||| ||||| ||||||| || ||||||||||| ||||||||||||||||    
T  35431140 ccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatccgt 35431196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 40064014 - 40063958
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    ||||||||||||||  ||||| ||||| |||||||||||||||| ||||||||||||    
T  40064014 gacaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 16869699 - 16869773
Alignment:
Q  140 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||||||| ||||||| |||||||| | ||| ||| | |||||||||||||||| | |||||||| |||||||    
T  16869699 gtgtccgacaccgacaccaacacgacaccaatgattatagtgaattatgtcattttcttaaattattttccgtgt 16869773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 30068050 - 30068087
Alignment:
Q  178 actgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||||||||||| |||||||||||||||||||    
T  30068050 actgaattatgtcattttctcaaattattatccgtgtc 30068087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 14513170 - 14513226
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    ||||||||||| | ||||||| |||| ||||||||||| ||||| ||||||||||||    
T  14513170 gacaccgacaccaaatctatgattacgctgaattatgtaattttctcaaattattat 14513226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 22652108 - 22652068
Alignment:
Q  94 agctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  22652108 agctatgaagcacggacactcctcggattagacgtgtcccg 22652068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 39820488 - 39820436
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    ||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||    
T  39820488 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 18646223 - 18646180
Alignment:
Q  164 acatctatgtttacactgaattatgtcattttttcaaattatta 207  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||    
T  18646223 acatatatgattacactgaatcatgtcattttttcaaattatta 18646180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 28883880 - 28883935
Alignment:
Q  158 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtg 213  Q
    |||| |||| ||||| || ||||||||||||||||||| |||||||||||| ||||    
T  28883880 gacaagacacctatgattccactgaattatgtcattttctcaaattattattcgtg 28883935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 29510233 - 29510271
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccg 29510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 39820549 - 39820503
Alignment:
Q  94 agctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 140  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||||    
T  39820549 agctatgaagcacggacacttctcggattaggcgtgtcccgtgtcgg 39820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 40064081 - 40064043
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  40064081 ctatgtagcacggacactcctcggattagatgtgtcccg 40064043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 41831958 - 41832000
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  41831958 ttacactgaattatgtgattttttcaaattattaactgtgtcg 41832000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 3658203 - 3658146
Alignment:
Q  159 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||| ||||| |||||||||| ||  | ||||| ||||||||||||||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatccgtgtcg 3658146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 4948693 - 4948660
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  4948693 ttacactgaattatgtgattttttcaaattatta 4948660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 13203733 - 13203700
Alignment:
Q  99 tgaagtacggacactcctcggattagatgtgtcc 132  Q
    ||||| ||||||||||||||||||||||||||||    
T  13203733 tgaagcacggacactcctcggattagatgtgtcc 13203700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 25566882 - 25566849
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  25566882 ttacactgaattatgtgattttttcaaattatta 25566849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 26915235 - 26915300
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||||||||  | || ||||| | |||||||||||||| ||||| | ||||||||||||    
T  26915235 cgacaccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcg 26915300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 28642449 - 28642408
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||||||||| | ||||||||||||||| |||||||    
T  28642449 ttacactgaattatgtaaatttttcaaattattaaccgtgtc 28642408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 3911189 - 3911117
Alignment:
Q  136 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 208  Q
    |||||||||||| | ||||||| ||||||||  |||| || ||||||||||||| ||||| | |||| |||||    
T  3911189 gtcggtgtccgataccgacaccaacacgacacttatgatttcactgaattatgtgattttattaaatgattat 3911117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 6211456 - 6211488
Alignment:
Q  175 tacactgaattatgtcattttttcaaattatta 207  Q
    |||| ||||||||||||||||||||||||||||    
T  6211456 tacattgaattatgtcattttttcaaattatta 6211488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 24413497 - 24413537
Alignment:
Q  94 agctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||||| ||||||||| ||||||||||| ||||||||    
T  24413497 agctatgaagcacggacacttctcggattagacgtgtcccg 24413537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 42004942 - 42005006
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 215  Q
    |||||||||||| ||| ||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  42004942 cgacaccgacacaacacctatgattacactaaattatgtcattttctcaaattattatccgtgtc 42005006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 21145528 - 21145466
Alignment:
Q  154 caccgacacgacatctatgtttacactgaattatgtcatt-ttttcaaattattatccgtgtc 215  Q
    ||||||||||||  ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  21145528 caccgacacgacgcctatgattacactgaattatgtcatttttttcaaattattatccgtgtc 21145466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 22794080 - 22794136
Alignment:
Q  158 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    ||||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgt 22794136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 6936395 - 6936458
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||| ||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||    
T  6936395 cgacacagacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgt 6936458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 40747768 - 40747833
Alignment:
Q  151 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||| ||| |||| ||||  ||||| |||||||||||||||| ||||||||||||||||||||    
T  40747768 cgacaccaacatgacacctataattacattgaattatgtcattttctcaaattattatccgtgtcg 40747833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 48415728 - 48415786
Alignment:
Q  159 acacgacatctatgtttacactgaattatgtca-ttttttcaaattattatccgtgtcg 216  Q
    |||||||||||||| ||||||| |||||| ||| |||||| ||||||||||||||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatccgtgtcg 48415786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 22881567 - 22881627
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtccc-gtgtcggtgtccgacatcgacac 156  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  22881567 ctatgaagcacggacactcctcggattagacgtgtcccggtgtc-gtgtccgacaccgacac 22881627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 11634127 - 11634215
Alignment:
Q  159 acacgacatctatgtttacactgaattatgtcattttttcaaattattatcc-gtgtc-gtgtccggtatccgtgtttgtgtctgtgct 245  Q
    |||||||| ||||| ||||| | ||||||||  |||| |||||||||||||| ||||| ||||||||| |||||||  |||||||||||    
T  11634127 acacgacacctatgattacattaaattatgttgttttctcaaattattatccggtgtcggtgtccggtgtccgtgtcggtgtctgtgct 11634215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 42325601 - 42325561
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgt 214  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  42325601 ttacactgaattatgtcattttctcaaattattatcggtgt 42325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 48450548 - 48450592
Alignment:
Q  94 agctatgaagtacggacactcctcggattagatgtgtcccgtgtc 138  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||    
T  48450548 agctatgaagcacggacactcctcggattagacgtgtcctgtgtc 48450592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 113340 - 113298
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  113340 ttacactgaattatgtgattttttcaaattattagctgtgtcg 113298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 398783 - 398825
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  398783 ttacactgaattatgtgattttttcaaattattagcggtgtcg 398825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 9828174 - 9828136
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccg 9828136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 17754352 - 17754310
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  17754352 ttacactgaattatgtaattttttcaaattattagcggtgtcg 17754310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 30847733 - 30847771
Alignment:
Q  169 tatgtttacactgaattatgtcattttttcaaattatta 207  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  30847733 tatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 1486727 - 1486760
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  1486727 ttacactgaattatgtgattttttcaaattatta 1486760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 6612189 - 6612222
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  6612189 ttacactgaattatgtaattttttcaaattatta 6612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 18190126 - 18190159
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  18190126 ttacactgaattatgtaattttttcaaattatta 18190159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 24577204 - 24577237
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  24577204 ttacactgaattatgtgattttttcaaattatta 24577237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 40258951 - 40258984
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  40258951 ttacactgaattatgtgattttttcaaattatta 40258984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 7918154 - 7918190
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcc 132  Q
    |||||||| |||||||||||||||||||| |||||||    
T  7918154 ctatgaagcacggacactcctcggattaggtgtgtcc 7918190  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 11571626 - 11571590
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatcc 210  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  11571626 ttacattgaattatgtcattttctcaaattattatcc 11571590  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 18337370 - 18337338
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatt 206  Q
    |||||||||||||||| ||||||||||||||||    
T  18337370 ttacactgaattatgtgattttttcaaattatt 18337338  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 34741965 - 34741921
Alignment:
Q  96 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 140  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||    
T  34741965 ctatgaagcacggacactcttcggattaggcgtgtcccgtgtcgg 34741921  T

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Target: scaffold0199 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 2008 - 1948
Alignment:
Q  156 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    ||||||||||| ||||| ||||||| || |||||||||||  |||||||||||||||||||    
T  2008 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtcg 1948  T

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Target: scaffold0066 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 33360 - 33423
Alignment:
Q  152 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| | |  |||||||||||||||| ||||||||||||||||| | ||||||    
T  33360 gacaccgacacgacat-tgtaattacactgaattatgttattttttcaaattattagctgtgtcg 33423  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 225253 - 225328
Alignment:
Q  140 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||| ||||||| ||||||||  |||  ||||| || ||||||||||||| ||||||||||||| ||||||    
T  225253 gtgtccgaca-cgacaccaacacgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcg 225328  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 13544 - 13505
Alignment:
Q  95 gctatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  13544 gctatgaagtacggacactcctcggattaggtgtatcccg 13505  T

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Target: scaffold1528 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 1076 - 1034
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  1076 ttacactgaattatgtaattttttcaaattattagcggtgtcg 1034  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 20213 - 20171
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  20213 ttacactgaattatgtgattttttcaaattattagctgtgtcg 20171  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 3867 - 3909
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||    
T  3867 ttacactgaattatgtgatttttttaaattattaaccgtgtcg 3909  T

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Target: scaffold0103 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 51852 - 51810
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  51852 ttacactgaattatgtgattttttcaaattattagctgtgtcg 51810  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 70319 - 70277
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  70319 ttacactgaattatgttattttttcaaattattaactgtgtcg 70277  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 46723 - 46681
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattattatccgtgtcg 216  Q
    |||||||||||||||| ||||||||||||||||| | ||||||    
T  46723 ttacactgaattatgtgattttttcaaattattaactgtgtcg 46681  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 403 - 440
Alignment:
Q  97 tatgaagtacggacactcctcggattagatgtgtcccg 134  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccg 440  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 14571 - 14538
Alignment:
Q  174 ttacactgaattatgtcattttttcaaattatta 207  Q
    |||||||||||||||| |||||||||||||||||    
T  14571 ttacactgaattatgtgattttttcaaattatta 14538  T

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