View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_75 (Length: 252)
Name: NF5400_high_75
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_75 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 5399123 - 5398979
Alignment:
| Q |
114 |
ttggttttgaatagtagctatatatgatagtcttctttcttctttttggtactttcttgatgattattctatataattttctcacgtgggtgta------ |
207 |
Q |
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| T |
5399123 |
ttggttttgaatagtagctatatatgacagtcttctttcttctttttggtactttcttgatgattattctatataattttctcacgtgggtgtacatgta |
5399024 |
T |
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| Q |
208 |
catggatattgcaattcattctttgattttctcatattctgttct |
252 |
Q |
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| T |
5399023 |
catggatattgcaattcattctttgattttctcatattctgttct |
5398979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 5399267 - 5399168
Alignment:
| Q |
19 |
aatgagatggaaacatttgtctcttttcctgaaattatgttggtcaataatgaatcttagccctccatacatcatgttaaagttatggagtgtcattggt |
118 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399267 |
aatgagatggaaacatttgtctcttttcttgaaattatgttggtcaataatgaatcttagccctccatacatcatgttaaagttatggagtgtcattggt |
5399168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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