View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_76 (Length: 252)
Name: NF5400_high_76
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_76 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 252
Target Start/End: Original strand, 10267714 - 10267952
Alignment:
| Q |
24 |
gtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgcgtcacttcccattgatgttgccattgaaa----------ttctagc |
113 |
Q |
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| T |
10267714 |
gtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgtgtcacttcccattggtgttgccattgaaaaacaccaaaattctagc |
10267813 |
T |
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| Q |
114 |
ttgatttctgaaattcaaacacaaagatgaactttttggtaacatgatagagaaatagagaggaattgttaattgagttggtgatggttgaagggaacag |
213 |
Q |
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| T |
10267814 |
ttgatttctgaaattcaaacacaaagatgagctttttggtaacatgatagagaaatagagaggaattgttaattgggttggtgatggttgaagggaacag |
10267913 |
T |
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| Q |
214 |
ataccaaacctgatggttcctttccttcgtgttaaagtc |
252 |
Q |
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| T |
10267914 |
ataccaaacctgatggttcctttccttcgtgttaaagtc |
10267952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 10284754 - 10284691
Alignment:
| Q |
28 |
ccaccattgaatagctgcaccattgccatagccaaatgggctttccatgcgtcacttcccattg |
91 |
Q |
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| T |
10284754 |
ccaccattgaatagctgtacaactgccatgcccaaatgggccttccatgcttcacttcccattg |
10284691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 41883561 - 41883668
Alignment:
| Q |
24 |
gtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgcgtcacttcccattgatgttgccattgaaattctagcttgatttctg |
123 |
Q |
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| T |
41883561 |
gtaaccaccattgaataaccgcaccattgccatagccaaatgggctttccatctgtcacttcccattgctgttgccattgaaattctagcttaatttctg |
41883660 |
T |
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| Q |
124 |
aaattcaa |
131 |
Q |
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| T |
41883661 |
aaattcaa |
41883668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 41883674 - 41883711
Alignment:
| Q |
215 |
taccaaacctgatggttcctttccttcgtgttaaagtc |
252 |
Q |
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| T |
41883674 |
taccaaacctgatggctcctttccttcatgttaaagtc |
41883711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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