View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5400_high_80 (Length: 251)

Name: NF5400_high_80
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5400_high_80
NF5400_high_80
[»] chr8 (10 HSPs)
chr8 (1-238)||(41128185-41128428)
chr8 (1-42)||(5896073-5896114)
chr8 (1-42)||(1042781-1042822)
chr8 (7-42)||(9402945-9402980)
chr8 (7-42)||(36068368-36068403)
chr8 (4-42)||(6393602-6393640)
chr8 (1-42)||(8072514-8072555)
chr8 (9-42)||(9754131-9754164)
chr8 (5-42)||(11257918-11257955)
chr8 (5-45)||(17867505-17867545)
[»] chr3 (12 HSPs)
chr3 (1-45)||(43310510-43310554)
chr3 (1-44)||(50360701-50360744)
chr3 (3-45)||(46515838-46515880)
chr3 (5-42)||(36923582-36923619)
chr3 (5-44)||(12568681-12568720)
chr3 (5-44)||(13545145-13545184)
chr3 (5-42)||(21490433-21490470)
chr3 (5-42)||(28945884-28945921)
chr3 (5-42)||(51981714-51981751)
chr3 (1-42)||(52915531-52915572)
chr3 (4-44)||(11042783-11042823)
chr3 (10-42)||(42709898-42709930)
[»] chr1 (7 HSPs)
chr1 (3-45)||(49872226-49872268)
chr1 (1-42)||(25409642-25409683)
chr1 (4-42)||(12521349-12521387)
chr1 (1-39)||(13352301-13352339)
chr1 (5-42)||(3491487-3491524)
chr1 (1-42)||(42596959-42597000)
chr1 (5-42)||(47370363-47370400)
[»] chr7 (9 HSPs)
chr7 (1-42)||(39854165-39854206)
chr7 (3-42)||(6647575-6647614)
chr7 (5-42)||(37391099-37391136)
chr7 (5-42)||(38073647-38073684)
chr7 (5-42)||(40211807-40211844)
chr7 (3-42)||(10679158-10679197)
chr7 (1-39)||(41888871-41888909)
chr7 (1-42)||(21148449-21148490)
chr7 (5-41)||(11667059-11667095)
[»] chr4 (13 HSPs)
chr4 (1-42)||(10109278-10109319)
chr4 (1-42)||(41069073-41069114)
chr4 (1-41)||(30538002-30538042)
chr4 (1-39)||(20789228-20789266)
chr4 (1-42)||(32318574-32318615)
chr4 (5-42)||(50533480-50533517)
chr4 (1-41)||(4960430-4960470)
chr4 (4-42)||(42899558-42899596)
chr4 (5-42)||(11873133-11873170)
chr4 (5-42)||(22409404-22409441)
chr4 (1-42)||(24010263-24010304)
chr4 (13-45)||(14136633-14136665)
chr4 (5-45)||(52279044-52279084)
[»] chr6 (5 HSPs)
chr6 (3-45)||(3213714-3213756)
chr6 (1-31)||(8853672-8853702)
chr6 (1-42)||(31767842-31767883)
chr6 (13-41)||(32785841-32785869)
chr6 (3-31)||(34396049-34396077)
[»] scaffold0154 (1 HSPs)
scaffold0154 (5-42)||(36407-36444)
[»] chr5 (6 HSPs)
chr5 (1-42)||(10044225-10044266)
chr5 (1-42)||(16285912-16285953)
chr5 (1-42)||(21369172-21369214)
chr5 (5-42)||(13789682-13789719)
chr5 (1-42)||(28024193-28024234)
chr5 (5-34)||(43277953-43277982)
[»] chr2 (7 HSPs)
chr2 (1-42)||(30326107-30326148)
chr2 (1-42)||(41766343-41766384)
chr2 (5-42)||(9374091-9374128)
chr2 (5-42)||(12497334-12497371)
chr2 (1-42)||(14776331-14776372)
chr2 (1-42)||(32656303-32656344)
chr2 (1-29)||(16192683-16192711)
[»] scaffold0524 (1 HSPs)
scaffold0524 (5-42)||(1482-1519)
[»] scaffold0129 (1 HSPs)
scaffold0129 (5-42)||(37589-37626)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41128185 - 41128428
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatattatttaannnnnnncattaaattctta-------tggaataaaattaatgtttaacatga 93  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||         |||||||||||||       ||||||||||||| || |||||| ||    
T  41128185 ttgaaaattatgttaatttattgctcaaaatatttaatattaatt--tttttttcattaaattcttaccattattggaataaaattattgcttaacagga 41128282  T
Q  94 cccaacaatttttaacttagctacttcaattcccnnnnnnnnn-ttatcgacccaagtcgctggtttccaaattactaattaaactccttattcaacaaa 192  Q
    |||||||||||||||||||||||||||| |||||          |||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  41128283 cccaacaatttttaacttagctacttcagttcccagaaaaaaaattatcgacccaagtccgtggtttccaaattactaattaaactccttattcaacaaa 41128382  T
Q  193 tgtttctagagatcatggatacctctttatacaactcatgtgagaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41128383 tgtttctagagatcatggatacctctttatacaactcatgtgagaa 41128428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5896114 - 5896073
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  5896114 ttgaaaattgtgttaatttattgctcaaaatgtttaatatta 5896073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1042822 - 1042781
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  1042822 ttgaaaattgtgttaatttattgcttaaaatgtttaatatta 1042781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 9402980 - 9402945
Alignment:
Q  7 attgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||||| ||||||||||    
T  9402980 attgtgttaatttattgctcaaaatgtttaatatta 9402945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 36068368 - 36068403
Alignment:
Q  7 attgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||||| ||||||||||    
T  36068368 attgtgttaatttattgctcaaaatgtttaatatta 36068403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 6393602 - 6393640
Alignment:
Q  4 aaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  6393602 aaaattgtgttaatttactgctcaaaatgtttaatatta 6393640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8072555 - 8072514
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||| | ||||||| ||||||||||    
T  8072555 ttgaaaattgtgttaatttatggttcaaaatgtttaatatta 8072514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 9754164 - 9754131
Alignment:
Q  9 tgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  9754164 tgtgttaatttattgttcaaaatatttaatatta 9754131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 11257918 - 11257955
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  11257918 aaattgtgttaatttattgcttaaaatgtttaatatta 11257955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 17867505 - 17867545
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatattattt 45  Q
    |||||||||||||||||| || |||| ||||||||||||||    
T  17867505 aaattgtgttaatttattacttaaaaaatttaatattattt 17867545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43310510 - 43310554
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatattattt 45  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  43310510 ttgaaaattgtgttaatttattgctcaaaatgtttaatattattt 43310554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50360701 - 50360744
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatattatt 44  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  50360701 ttgaaaatggtgttaatttattgctcaaaatgtttaatattatt 50360744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 46515838 - 46515880
Alignment:
Q  3 gaaaattgtgttaatttattgctcaaaatatttaatattattt 45  Q
    |||||||||||||||||||| ||||||| ||||||||||||||    
T  46515838 gaaaattgtgttaatttatttctcaaaaaatttaatattattt 46515880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 36923619 - 36923582
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36923619 aaattgtgttaatttattgctcaaaatgtttaatatta 36923582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 12568720 - 12568681
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatattatt 44  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  12568720 aaattgtcttaatttattgctcaaaatatttaatactatt 12568681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 13545184 - 13545145
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatattatt 44  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  13545184 aaattgtcttaatttattgctcaaaatatttaatactatt 13545145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 21490433 - 21490470
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  21490433 aaattgtgttaatttattgttcaaaatgtttaatatta 21490470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 28945884 - 28945921
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  28945884 aaattgtgttaatttattgcttaaaatgtttaatatta 28945921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 51981751 - 51981714
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  51981751 aaattgtgttaatttattgttcaaaatgtttaatatta 51981714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52915572 - 52915531
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||||||||||||   ||||||||||||||||    
T  52915572 ttgaaaattgtgttaatttattgtgaaaaatatttaatatta 52915531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 11042783 - 11042823
Alignment:
Q  4 aaaattgtgttaatttattgctcaaaatatttaatattatt 44  Q
    |||||| |||||||||||||||||||| |||||||| ||||    
T  11042783 aaaattatgttaatttattgctcaaaaaatttaatactatt 11042823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 42709930 - 42709898
Alignment:
Q  10 gtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||| ||||||||||||||||||    
T  42709930 gtgttaatttattgatcaaaatatttaatatta 42709898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 49872226 - 49872268
Alignment:
Q  3 gaaaattgtgttaatttattgctcaaaatatttaatattattt 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  49872226 gaaaattgtgttaatttattgctcaaaaaatttaatattattt 49872268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25409683 - 25409642
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  25409683 ttgaaaattgtgttaatttattgctcaagatatttaatatta 25409642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 12521349 - 12521387
Alignment:
Q  4 aaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  12521349 aaaattatgttaatttattgctcaaaatgtttaatatta 12521387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13352339 - 13352301
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaata 39  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  13352339 ttgaaaattgtgttaatttattgttcaaaatgtttaata 13352301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 3491524 - 3491487
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  3491524 aaattgtgataatttattgctcaaaatttttaatatta 3491487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42596959 - 42597000
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||    
T  42596959 ttgaatattgtgttaatttattgcttaaaatgtttaatatta 42597000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 47370400 - 47370363
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  47370400 aaattgtgttgatttattgctcaaaatgtttaatatta 47370363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39854206 - 39854165
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  39854206 ttgaaaattgtgttaatttattgttcaaaatatttaatatta 39854165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 6647575 - 6647614
Alignment:
Q  3 gaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  6647575 gaaaattgtgttaatttattgttcaaaatatttaatatta 6647614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 37391099 - 37391136
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  37391099 aaattgtgttaatttattgctcaaaatgtttaatatta 37391136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 38073684 - 38073647
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||||||||||||||||||||| |||||    
T  38073684 aaattgtgttaatttattgctcaaaatatttagtatta 38073647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 40211844 - 40211807
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  40211844 aaattgtcttaatttattgctcaaaatatttaatatta 40211807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 10679158 - 10679197
Alignment:
Q  3 gaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  10679158 gaaaattgtgttaatttattgctcaaaaaattcaatatta 10679197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41888909 - 41888871
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaata 39  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  41888909 ttgaaaattgtgttaatttattgttcaaaatgtttaata 41888871  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21148449 - 21148490
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||| |||||||||| |||||||| ||||||||||    
T  21148449 ttgaaaattgtattaatttattactcaaaatgtttaatatta 21148490  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 11667059 - 11667095
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatt 41  Q
    ||||||||||||||||||||||||| | |||||||||    
T  11667059 aaattgtgttaatttattgctcaaattgtttaatatt 11667095  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10109278 - 10109319
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  10109278 ttgaaaattgtgttaatttattgctcaaaatgtttaatatta 10109319  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41069114 - 41069073
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  41069114 ttgaaaattgtgttaatttattgcttaaaatatttaatatta 41069073  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30538042 - 30538002
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatt 41  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  30538042 ttgaaaattgtgttaatttattgctcaaaatgtttaatatt 30538002  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 20789266 - 20789228
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaata 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  20789266 ttgaaaattgtgttaatttattgctcaaaatgtttaata 20789228  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32318574 - 32318615
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  32318574 ttgaaaattgtgttaatttattgttcaaaatgtttaatatta 32318615  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 50533480 - 50533517
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  50533480 aaattgtgttaatttattgcttaaaatatttaatatta 50533517  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4960470 - 4960430
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatt 41  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  4960470 ttgaaaattgtgttaatttattgctcaaattgtttaatatt 4960430  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 42899596 - 42899558
Alignment:
Q  4 aaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  42899596 aaaattgtgttaatttattgcttaaaatgtttaatatta 42899558  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 11873133 - 11873170
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  11873133 aaattgtgttaatttattgttcaaaatatttgatatta 11873170  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 22409441 - 22409404
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  22409441 aaattgtgttaatttattgcttaaaatgtttaatatta 22409404  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24010304 - 24010263
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||||||||||||  |||||| ||||||||||    
T  24010304 ttgaaaattgtgttaatttattgtccaaaatgtttaatatta 24010263  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 14136665 - 14136633
Alignment:
Q  13 ttaatttattgctcaaaatatttaatattattt 45  Q
    |||||||||||||||| ||||||||||||||||    
T  14136665 ttaatttattgctcaacatatttaatattattt 14136633  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 52279084 - 52279044
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatattattt 45  Q
    |||||||||||||||||||||||||| || ||||| |||||    
T  52279084 aaattgtgttaatttattgctcaaaaaatctaatactattt 52279044  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 3213756 - 3213714
Alignment:
Q  3 gaaaattgtgttaatttattgctcaaaatatttaatattattt 45  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  3213756 gaaaattatgctaatttattgctcaaaatatttaatattattt 3213714  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8853672 - 8853702
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaat 31  Q
    |||||||||||||||||||||||||||||||    
T  8853672 ttgaaaattgtgttaatttattgctcaaaat 8853702  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31767842 - 31767883
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||| | ||||| ||||||||||    
T  31767842 ttgaaaattgtgttaatttattggtaaaaatgtttaatatta 31767883  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 32785869 - 32785841
Alignment:
Q  13 ttaatttattgctcaaaatatttaatatt 41  Q
    |||||||||||||||||||||||||||||    
T  32785869 ttaatttattgctcaaaatatttaatatt 32785841  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 34396077 - 34396049
Alignment:
Q  3 gaaaattgtgttaatttattgctcaaaat 31  Q
    |||||||||||||||||||||||||||||    
T  34396077 gaaaattgtgttaatttattgctcaaaat 34396049  T

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Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 36444 - 36407
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||||||| |||||||||||||||||||    
T  36444 aaattgtgttaatttatttctcaaaatatttaatatta 36407  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10044266 - 10044225
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  10044266 ttgaaagttgtgttaatttattgctcaaaatgtttaatatta 10044225  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16285953 - 16285912
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  16285953 ttgaaaattgtgttaatttattgctaagaatatttaatatta 16285912  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21369172 - 21369214
Alignment:
Q  1 ttgaaaattgtgttaatttatt-gctcaaaatatttaatatta 42  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  21369172 ttgaaaattgtgttaatttattagcttaaaatatttaatatta 21369214  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 13789719 - 13789682
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||||||||||||| | |||||||||||    
T  13789719 aaattgtgttaatttattgctcaataaatttaatatta 13789682  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28024234 - 28024193
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||| |||| |||||||||| |||||||||||||||||||||    
T  28024234 ttgataattatgttaatttaatgctcaaaatatttaatatta 28024193  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 43277982 - 43277953
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatt 34  Q
    ||||||||||||||||||||||||||||||    
T  43277982 aaattgtgttaatttattgctcaaaatatt 43277953  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30326148 - 30326107
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  30326148 ttgaaaattgtgttaatttattactcaaaatgtttaatatta 30326107  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41766343 - 41766384
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  41766343 ttgaaaattgtgttattttattgctcaaaatgtttaatatta 41766384  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 9374091 - 9374128
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  9374091 aaattgttttaatttattgctcaaaatgtttaatatta 9374128  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 12497334 - 12497371
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  12497334 aaattgtgttaatttattgcttaaaatgtttaatatta 12497371  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14776331 - 14776372
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||||||||||||||||||| |||||| | ||||||||||    
T  14776331 ttgaaaattgtgttaatttattactcaaattgtttaatatta 14776372  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32656303 - 32656344
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    |||||| |||||||||||||||| | ||||||||||||||||    
T  32656303 ttgaaacttgtgttaatttattgattaaaatatttaatatta 32656344  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 16192683 - 16192711
Alignment:
Q  1 ttgaaaattgtgttaatttattgctcaaa 29  Q
    |||||||||||||||||||||||||||||    
T  16192683 ttgaaaattgtgttaatttattgctcaaa 16192711  T

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Target: scaffold0524 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 1519 - 1482
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  1519 aaattgtgttaatttattgctcaaaatgtttgatatta 1482  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 37589 - 37626
Alignment:
Q  5 aaattgtgttaatttattgctcaaaatatttaatatta 42  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  37589 aaattgtgttaatttattgcttaaaatgtttaatatta 37626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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