View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_83 (Length: 249)
Name: NF5400_high_83
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_83 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 9385140 - 9385373
Alignment:
| Q |
1 |
aaaagttggtatgaaattttcttctttgccttctttctgaaattttcataagaagaaacactgttttcaatgcttgaatcaccttttcttcttctacgta |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9385140 |
aaaagttggtatgaaattttcttccttgccttctttctgaaattttcataagaagaaacactgttttcaatgcttgaatcaccttttcttcttctacgta |
9385239 |
T |
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| Q |
101 |
ttgctgattgaagtgtttgtatatgttctctaagaaccaataataaatcccttgaacactcacaagcatctagcaatgtgattgagctacacaatgaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9385240 |
ttgctgattgaagtgtttgtatatgttctctaagaaccaataataaatcccttgaacactcacaagcatctagcaatgtgattgagctacacaatgaatc |
9385339 |
T |
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| Q |
201 |
tgatatgagttttccatcttggtaacgtagaaga |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9385340 |
tgatatgagttttccatcttggtaacgtagaaga |
9385373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31948225 - 31948271
Alignment:
| Q |
1 |
aaaagttggtatgaaattttcttctttgccttctttctgaaattttc |
47 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31948225 |
aaaaattggtatgaaattttcttctttgccttctttctgaaattttc |
31948271 |
T |
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