View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5400_high_87 (Length: 244)
Name: NF5400_high_87
Description: NF5400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5400_high_87 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 30431934 - 30431721
Alignment:
| Q |
19 |
tttctagtcatggccatagtgattaatgcctactctatgttgcggatactatattttatttcatattcagatacaacatttattgctttgttatatatga |
118 |
Q |
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| T |
30431934 |
tttctagtcatggccatagtgattaatgcctactctatgttgcggatactatattttatttcatattcagatacaacatttattgttttgttatatatga |
30431835 |
T |
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| Q |
119 |
ccaaatttacattttcatccccagtgttaatatatctggtatgttttggatggtaccatttggagtcagtgttgctggaaggttagtcttgcatgctgag |
218 |
Q |
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| T |
30431834 |
ccaaatttacattttcatcctcagtattaatgtatctggtatgttttggatgataccatttggggtcagtgttgctggaaggttagtcttgcatgctgag |
30431735 |
T |
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| Q |
219 |
ctctactaaaatat |
232 |
Q |
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| T |
30431734 |
ctctattaatatat |
30431721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 30415229 - 30415099
Alignment:
| Q |
85 |
tcagatacaacatttattgctttgttatatatgaccaaatttacattttcatccccagtgttaatatatctggtatgttttggatggtaccatttggagt |
184 |
Q |
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| T |
30415229 |
tcagatacaaccattattgctttattatctgtggctaaatttactttttcatctacagtgttaatatatccggtatgctttggatggtaccgtttggaat |
30415130 |
T |
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| Q |
185 |
cagtgttgctggaaggttagtcttgcatgct |
215 |
Q |
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| T |
30415129 |
tagtgtttctgcaaggttagtagtgcatgct |
30415099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 30380523 - 30380388
Alignment:
| Q |
82 |
tattcagatacaaca-tttattgctttgttatata--tgaccaaatttacattttcatccccagtgttaatatatctggtatgttttggatggtaccatt |
178 |
Q |
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| T |
30380523 |
tattcagatacatcaatttattgctttgttatatacctgacccaagt-actttttcttccatagtattaatatattgggtacattctggatggtgccatt |
30380425 |
T |
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| Q |
179 |
tggagtcagtgttgctggaaggttagtcttgcatgct |
215 |
Q |
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| T |
30380424 |
cggagttagtgttgcaggaaggttagtctttcatgct |
30380388 |
T |
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